New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 739194	38 (0.840)	7 (0.160)	6/234	NT	14.9%	coding (225/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 739205	44 (1.030)					coding (214/867 nt)	pilD	leader peptidase/N‑methyltransferase

TCCCACGCACGAATCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/739174‑739194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgcCCACACTGCGCGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTACCCGGTAGTGGAAGTGGCCAGCGCGCTGCT  <  NC_002947/739205‑739069                                                                                                                                                                TCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGG                                                                           <  1:1041301/85‑1 TCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGG                                                                           >  2:1041301/1‑85     ACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTACCCGGTAGTGGAAGTGG               <  1:1099569/141‑1     ACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTACCCGGTAGTGGAAGTGG               >  2:1099569/1‑141         ACGAATCCGGTGCGCGCAGTGTGGGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTACCCGGTAGTGGAAGTGGCCAGCGCGCTGCT  >  2:708520/1‑150         ACGAATCCGGTGCGCGCAGTGTGGGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTC                                                           <  1:208935/93‑1         ACGAATCCGGTGCGCGCAGTGTGGGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTC                                                           >  2:208935/1‑93                                                                                                                                                                TCCCACGCACGAATCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/739174‑739194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgcCCACACTGCGCGCACCGGATTCGTGCGTGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTACCCGGTAGTGGAAGTGGCCAGCGCGCTGCT  <  NC_002947/739205‑739069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.