New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 739194	38 (0.840)	7 (0.160)	6/234	NT	14.9%	coding (225/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 739205	44 (1.030)					coding (214/867 nt)	pilD	leader peptidase/N‑methyltransferase

GCCACTACCAGCGACAGCAGCGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATACACCAGCACGTTGA  >  NC_002947/739054‑739333                                                                                                                                             |                                                                                                                                            gCCACTACCAGCGACAGCAGCGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAgtgt                                                                                                                                    >  1:1027958/1‑150 (MQ=255)  ccACTACCAGCGACAGCAGCGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTACTTACACGCACGAATCCGGTGCGCGCAGtgtg                                                                                                                                   <  1:635335/150‑1 (MQ=255)                agcagcGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCg                                                                                                                     <  1:292054/150‑1 (MQ=255)                agcagcGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgt                                                                                                                     >  2:708520‑M2/1‑137 (MQ=255)                    gcgcgcTGGCCACGTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGGCCGGCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAACCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGggca                                                                                                                 <  2:37808/150‑1 (MQ=255)                          tGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGTACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATTACCGGAATGTTCTCCAACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGcaca                                                                                                           >  2:449151/1‑150 (MQ=255)                          tGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGcaca                                                                                                           >  2:77123/1‑150 (MQ=255)                             ccACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgtgcgt                                                                                                                 >  2:1099569‑M2/1‑124 (MQ=255)                             ccACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgtgcgt                                                                                                                 <  1:1099569‑M2/141‑18 (MQ=255)                              cACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCgg                                                                                                                    >  2:1083252/1‑137 (MQ=255)                              cACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCgg                                                                                                                    <  1:1083252/137‑1 (MQ=255)                                    cACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcg                                                                                                 >  2:935635/1‑150 (MQ=255)                                         ccGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGt                                                                                            >  1:1158728/1‑150 (MQ=255)                                                        tGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAc                                                                                                  >  2:838865/1‑129 (MQ=255)                                                        tGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAc                                                                                                  <  1:838865/129‑1 (MQ=255)                                                           tGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGaa                                                                                                    >  2:426206/1‑124 (MQ=255)                                                           tGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGaa                                                                                                    <  1:426206/124‑1 (MQ=255)                                                             cGGTTTTTGCAGGATGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCAGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGcccc                                                                        <  2:372080/150‑1 (MQ=255)                                                                        ggACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcgcgc                                                                                              <  1:841000/117‑1 (MQ=255)                                                                        ggACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcgcgc                                                                                              >  2:841000/1‑117 (MQ=255)                                                                         gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGcc                                                                          <  1:946872/136‑1 (MQ=255)                                                                         gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGcc                                                                          >  2:946872/1‑136 (MQ=255)                                                                         gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTgc                                                            >  2:1184642/1‑150 (MQ=255)                                                                         gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgt                                                                                                                     >  2:208935‑M2/1‑80 (MQ=255)                                                                         gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgt                                                                                                                     <  1:208935‑M2/93‑14 (MQ=255)                                                                            gAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGcc                                                         <  2:517556/150‑1 (MQ=255)                                                                              aCAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGAAGTGTGGGCACTGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTc                                                       <  2:887059/150‑1 (MQ=255)                                                                                 gcgcCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACg                                                    >  2:729659/1‑150 (MQ=255)                                                                                    cccgcccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTg                                                 >  1:60964/1‑150 (MQ=255)                                                                                         ccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcgcgc                                                                                              <  1:18973/100‑1 (MQ=255)                                                                                         ccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcgcgc                                                                                              >  2:18973/1‑100 (MQ=255)                                                                                         ccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgtgcgtggga                                                                                                             >  2:1041301‑M2/1‑64 (MQ=255)                                                                                         ccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgtgcgtggga                                                                                                             <  1:1041301‑M2/85‑22 (MQ=255)                                                                                                       cTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATg                              >  1:601522/1‑150 (MQ=255)                                                                                                          atgaCCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATc                           <  2:29778/150‑1 (MQ=255)                                                                                                              ccGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCa                       <  2:601522/150‑1 (MQ=255)                                                                                                              ccGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCa                       >  1:211110/1‑150 (MQ=255)                                                                                                                 gAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTg                                                 <  2:39766/121‑1 (MQ=255)                                                                                                                 gAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTg                                                 >  1:39766/1‑121 (MQ=255)                                                                                                                 gAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGc                    >  1:95129/1‑150 (MQ=255)                                                                                                                     gTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATa                <  1:1184642/150‑1 (MQ=255)                                                                                                                      ttCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGc                                                >  2:164997/1‑117 (MQ=255)                                                                                                                      ttCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGc                                                <  1:164997/117‑1 (MQ=255)                                                                                                                        ctcCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATacac             <  1:77123/150‑1 (MQ=255)                                                                                                                         tcCCACGCACGAATCCGGTGCgcgcagtgtgggcaccggattcgtgcgtgggagaacattccggtcatcagctacctggccttgg                                                                             <  1:1041301‑M1/85‑65 (MQ=255)                                                                                                                         tcCCACGCACGAATCCGGTGCgcgcagtgtgggcaccggattcgtgcgtgggagaacattccggtcatcagctacctggccttgg                                                                             >  2:1041301‑M1/1‑21 (MQ=255)                                                                                                                             acgcacgAATCCGGTGCgcgcagtgtgggcaccggattcgtgcgtgggagaacattccggtcatcagctacctggccttgggcgggcgctgttcgtcctgcaaaaaccgcatcagcctgcgttacccggtagtggaagtgg                 >  2:1099569‑M1/1‑17 (MQ=255)                                                                                                                             acgcacgAATCCGGTGCgcgcagtgtgggcaccggattcgtgcgtgggagaacattccggtcatcagctacctggccttgggcgggcgctgttcgtcctgcaaaaaccgcatcagcctgcgttacccggtagtggaagtgg                 <  1:1099569‑M1/141‑125 (MQ=255)                                                                                                                                 acgAATCCGGTGCgcgcagtgtgggcaccggattcgtgcgtgggagaacattccggtcatcagctacctggccttgggcgggcgctgttcgtcctgcaaaaaccgcatcagcctgcgttacccggtagtggaagtggccagcgcgctgct    >  2:708520‑M1/1‑13 (MQ=255)                                                                                                                                 acgAATCCGGTGCgcgcagtgtgggcaccggattcgtgcgtgggagaacattccggtcatcagctacctggccttgggcgggcgctgttcgtc                                                             <  1:208935‑M1/93‑81 (MQ=255)                                                                                                                                 acgAATCCGGTGCgcgcagtgtgggcaccggattcgtgcgtgggagaacattccggtcatcagctacctggccttgggcgggcgctgttcgtc                                                             >  2:208935‑M1/1‑13 (MQ=255)                                                                                                                                   gAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATACACCAGCACGTTGa  >  1:882818/1‑150 (MQ=255)                                                                                                                                         ggTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATacac             >  2:548115/1‑133 (MQ=255)                                                                                                                                         ggTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATacac             <  1:548115/133‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            GCCACTACCAGCGACAGCAGCGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATACACCAGCACGTTGA  >  NC_002947/739054‑739333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.