New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 739194	38 (0.840)	7 (0.160)	6/234	NT	14.9%	coding (225/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 739205	44 (1.030)					coding (214/867 nt)	pilD	leader peptidase/N‑methyltransferase

AGCAGCGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATACACCAGCACGTTGATAAAGCTGCCCACCA  >  NC_002947/739069‑739348                                                                                                                                         |                                                                                                                                                agcagcGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCg                                                                                                                                    <  1:292054/150‑1 (MQ=255) agcagcGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgt                                                                                                                                    >  2:708520‑M2/1‑137 (MQ=255)     gcgcgcTGGCCACGTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGGCCGGCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAACCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGggca                                                                                                                                <  2:37808/150‑1 (MQ=255)           tGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGTACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATTACCGGAATGTTCTCCAACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGcaca                                                                                                                          >  2:449151/1‑150 (MQ=255)           tGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGcaca                                                                                                                          >  2:77123/1‑150 (MQ=255)              ccACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgtgcgt                                                                                                                                <  1:1099569‑M2/141‑18 (MQ=255)              ccACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgtgcgt                                                                                                                                >  2:1099569‑M2/1‑124 (MQ=255)               cACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCgg                                                                                                                                   <  1:1083252/137‑1 (MQ=255)               cACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCgg                                                                                                                                   >  2:1083252/1‑137 (MQ=255)                     cACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcg                                                                                                                >  2:935635/1‑150 (MQ=255)                          ccGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGt                                                                                                           >  1:1158728/1‑150 (MQ=255)                                         tGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAc                                                                                                                 >  2:838865/1‑129 (MQ=255)                                         tGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAc                                                                                                                 <  1:838865/129‑1 (MQ=255)                                            tGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGaa                                                                                                                   <  1:426206/124‑1 (MQ=255)                                            tGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGaa                                                                                                                   >  2:426206/1‑124 (MQ=255)                                              cGGTTTTTGCAGGATGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCAGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGcccc                                                                                       <  2:372080/150‑1 (MQ=255)                                                         ggACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcgcgc                                                                                                             >  2:841000/1‑117 (MQ=255)                                                         ggACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcgcgc                                                                                                             <  1:841000/117‑1 (MQ=255)                                                          gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGcc                                                                                         >  2:946872/1‑136 (MQ=255)                                                          gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGcc                                                                                         <  1:946872/136‑1 (MQ=255)                                                          gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTgc                                                                           >  2:1184642/1‑150 (MQ=255)                                                          gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgt                                                                                                                                    <  1:208935‑M2/93‑14 (MQ=255)                                                          gACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgt                                                                                                                                    >  2:208935‑M2/1‑80 (MQ=255)                                                             gAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGcc                                                                        <  2:517556/150‑1 (MQ=255)                                                               aCAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGAAGTGTGGGCACTGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTc                                                                      <  2:887059/150‑1 (MQ=255)                                                                  gcgcCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACg                                                                   >  2:729659/1‑150 (MQ=255)                                                                     cccgcccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTg                                                                >  1:60964/1‑150 (MQ=255)                                                                          ccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcgcgc                                                                                                             <  1:18973/100‑1 (MQ=255)                                                                          ccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAAcgcgc                                                                                                             >  2:18973/1‑100 (MQ=255)                                                                          ccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgtgcgtggga                                                                                                                            >  2:1041301‑M2/1‑64 (MQ=255)                                                                          ccAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCCCACACTGCGCgcaccggattcgtgcgtggga                                                                                                                            <  1:1041301‑M2/85‑22 (MQ=255)                                                                                        cTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATg                                             >  1:601522/1‑150 (MQ=255)                                                                                           atgaCCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATc                                          <  2:29778/150‑1 (MQ=255)                                                                                               ccGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCa                                      <  2:601522/150‑1 (MQ=255)                                                                                               ccGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCa                                      >  1:211110/1‑150 (MQ=255)                                                                                                  gAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTg                                                                <  2:39766/121‑1 (MQ=255)                                                                                                  gAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTg                                                                >  1:39766/1‑121 (MQ=255)                                                                                                  gAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGc                                   >  1:95129/1‑150 (MQ=255)                                                                                                      gTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATa                               <  1:1184642/150‑1 (MQ=255)                                                                                                       ttCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGc                                                               >  2:164997/1‑117 (MQ=255)                                                                                                       ttCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGc                                                               <  1:164997/117‑1 (MQ=255)                                                                                                         ctcCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATacac                            <  1:77123/150‑1 (MQ=255)                                                                                                                    gAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATACACCAGCACGTTGa                 >  1:882818/1‑150 (MQ=255)                                                                                                                          ggTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATacac                            >  2:548115/1‑133 (MQ=255)                                                                                                                          ggTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATacac                            <  1:548115/133‑1 (MQ=255)                                                                                                                                cgcAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTc                                                    >  1:158911/1‑103 (MQ=255)                                                                                                                                cgcAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTc                                                    <  2:158911/103‑1 (MQ=255)                                                                                                                                 gcAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGa                                 >  2:377184/1‑121 (MQ=255)                                                                                                                                 gcAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGa                                 <  1:377184/121‑1 (MQ=255)                                                                                                                                 gcAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATACACCAGCACGTTGATAAAGCTGCccac    >  2:696450/1‑150 (MQ=255)                                                                                                                                   aGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATACACCAGCACGTTGATAAAGCTGCccacca  <  2:1158728/150‑1 (MQ=255)                                                                                                                                         ggCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCa                                                             >  2:782954/1‑85 (MQ=255)                                                                                                                                         ggCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCa                                                             <  1:782954/85‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                AGCAGCGCGCTGGCCACTTCCACTACCGGGTAACGCAGGCTGATGCGGTTTTTGCAGGACGAACAGCGCCCGCCCAAGGCCAGGTAGCTGATGACCGGAATGTTCTCCCACGCACGAATCCGGTGCGCGCAGTGTGGGCACCGGGAGGCGGGCAGGCACAGGTCGAAACGCGCGTGCTGCGTGGTCGGCAGCCCCAATACCTCTTGCGCCTCACGCTGCCATTGCCGCTCCAGCATGATCGGCAGGCGATACACCAGCACGTTGATAAAGCTGCCCACCA  >  NC_002947/739069‑739348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.