New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 840427	46 (1.020)	4 (0.090)	4/238	NT	7.8%	coding (278/861 nt)	ispE	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase
	?	NC_002947	= 840463	50 (1.150)					coding (242/861 nt)	ispE	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase

CGCGTACGAACACCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/840278‑840427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaCCACGCTTGGCGCCGACATCTGGCTGACCAAGGTACTGCCCATGGGCGGAGGTATCGGCGGTGGCAGCTCAGACGCCGCGACCACCCTGCTGGCCCTGGCCCACCTGTGGCAACTGGACTGGGACGAAGACCGCCTGGCCGCACTGG  <  NC_002947/840463‑840317                                                                                                                                                                                                                                                                                                           CGCGTACGAACCCCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCA                                                                                                                                                     <  1:109502/150‑1                     TCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATG                                                                                                                                                         <  1:799379/126‑1                     TCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATG                                                                                                                                                         >  2:799379/1‑126                                                                                            GGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCACCACGCTTGGCGCCGACATCTGGCTGACCAAGGTACTGCCC                                                                                                            <  1:181202/100‑1                                                                                            GGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCACCACGCTTGGCGCCGACATCTGGCTGACCAAGGTACTGCCC                                                                                                            >  2:181202/1‑100                                                                                              CCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCACCACGCTTGGCGCCGACATCTGGCTGACCAAGGTACTGCCCAT                                                                                                          >  1:187923/1‑100                                                                                              CCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCACCACGCTTGGCGCCGACATCTGGCTGACCAAGGTACTGCCCAT                                                                                                          <  2:187923/100‑1                                                                                                                                                    GCACCACGCTTGGCGCCGACATCTGGCTGACCAAGGTACTGCCCATGGGCGGAGGTATCGGCGGTGGCAGCTCAGACGCCGCGACCACCCTGCTGGCCCTGGCCCACCTGTGGCAACTGGACTGGGACGAAGACCGCCTGGCCGCACTGG  <  1:758338/150‑1                                                                                                                                                                                                                                                                                                           CGCGTACGAACACCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/840278‑840427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaCCACGCTTGGCGCCGACATCTGGCTGACCAAGGTACTGCCCATGGGCGGAGGTATCGGCGGTGGCAGCTCAGACGCCGCGACCACCCTGCTGGCCCTGGCCCACCTGTGGCAACTGGACTGGGACGAAGACCGCCTGGCCGCACTGG  <  NC_002947/840463‑840317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.