New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 840427	46 (1.020)	4 (0.090)	4/238	NT	7.8%	coding (278/861 nt)	ispE	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase
	?	NC_002947	= 840463	50 (1.150)					coding (242/861 nt)	ispE	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase

CGCGTACGAACACCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAA  >  NC_002947/840278‑840574                                                                                                                                                      |                                                                                                                                                    cgcgTACGAACCCCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCA                                                                                                                                                     <  1:109502‑M1/150‑1 (MQ=255)    gTACGAACACCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTa                                                                                                                                                  >  2:147175/1‑150 (MQ=255)         aaCACCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTg                                                                                                                                             <  1:1102888/150‑1 (MQ=255)         aaCACCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTg                                                                                                                                             <  2:138869/150‑1 (MQ=255)         aaCACCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTg                                                                                                                                             <  1:67479/150‑1 (MQ=255)           cacCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGt                                                                                                                                           <  1:710668/150‑1 (MQ=255)                       ggCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTc                                                                                                                               <  1:538978/150‑1 (MQ=255)                         cgcCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCgg                                                                                                                             <  2:993839/150‑1 (MQ=255)                            ccAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGgcgc                                                                                                                          >  1:556589/1‑150 (MQ=255)                                    aGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGTTTTTTGAGCTGCCATCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCgtg                                                                                                                  <  1:147175/150‑1 (MQ=255)                                    aGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCgtg                                                                                                                  >  2:1201084/1‑150 (MQ=255)                                    aGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCgtg                                                                                                                  <  1:671147/150‑1 (MQ=255)                                        ccAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgc                                                                                                              <  1:758338‑M2/150‑4 (MQ=255)                                                 ccAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATtgtg                                                                                                     >  1:1108653/1‑150 (MQ=255)                                                    ggCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGAtt                                                                                                  <  2:1108653/150‑1 (MQ=255)                                                     gCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCGGTCGATCGCTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTg                                                                                                 <  2:533815/150‑1 (MQ=255)                                                       ggTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATtgtg                                                                                                     <  2:799950/144‑1 (MQ=255)                                                       ggTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATtgtg                                                                                                     >  1:799950/1‑144 (MQ=255)                                                       ggTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTgca                                                                                               >  1:85065/1‑150 (MQ=255)                                                                    gtccagtTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGc                                                                                  >  2:744817/1‑150 (MQ=255)                                                                    gtccagtTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGc                                                                                  >  2:478129/1‑150 (MQ=255)                                                                         gcttgcgcaGTTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTa                                                                             >  2:47121/8‑150 (MQ=255)                                                                             ccACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGAt                                                                         <  2:364467/150‑1 (MQ=255)                                                                              cacaGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATc                                                                        >  2:683649/1‑150 (MQ=255)                                                                                    tGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTg                                                                  >  1:1110607/1‑150 (MQ=255)                                                                                       gccagggccagCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGACAAGCGTGGTTCGCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTg                                                               >  2:635690/1‑150 (MQ=255)                                                                                          agggccagCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCg                                                            >  1:1119424/1‑150 (MQ=255)                                                                                            ggccagCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAccacgcttggcgccgacatctggctgaccaaggtactgccc                                                                                                            >  2:181202‑M1/1‑59 (MQ=255)                                                                                            ggccagCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAccacgcttggcgccgacatctggctgaccaaggtactgccc                                                                                                            <  1:181202‑M1/100‑42 (MQ=255)                                                                                              ccagCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAccacgcttggcgccgacatctggctgaccaaggtactgcccat                                                                                                          >  1:187923‑M1/1‑57 (MQ=255)                                                                                              ccagCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAccacgcttggcgccgacatctggctgaccaaggtactgcccat                                                                                                          <  2:187923‑M1/100‑44 (MQ=255)                                                                                                  cagGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGAc                                                    <  2:556589/150‑1 (MQ=255)                                                                                                               gcgTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCg                                       <  2:85065/150‑1 (MQ=255)                                                                                                               gcgTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCg                                       <  1:478129/150‑1 (MQ=255)                                                                                                                     gAGCTGCCACCGTCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCAGCAAGCCGACCCGAACCGCTTTTCCCGCTTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGc                                 <  1:744817/150‑1 (MQ=255)                                                                                                                             aCCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGAt                         >  1:92732/1‑150 (MQ=255)                                                                                                                              ccgccgATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGa                          <  2:1166544/148‑1 (MQ=255)                                                                                                                              ccgccgATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGa                          >  1:1166544/1‑148 (MQ=255)                                                                                                                                gccgATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCAc                      <  2:1143273/150‑1 (MQ=255)                                                                                                                                 ccgATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACg                     >  1:210594/1‑150 (MQ=255)                                                                                                                                   gATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGcc                   >  1:599029/1‑150 (MQ=255)                                                                                                                                      aCCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATc                <  2:599029/150‑1 (MQ=255)                                                                                                                                         tCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATgcgcg                                                                                      >  1:453274/1‑77 (MQ=255)                                                                                                                                         tCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATgcgcg                                                                                      <  2:453274/77‑1 (MQ=255)                                                                                                                                         tCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGtt                                                                   >  2:550685/1‑96 (MQ=255)                                                                                                                                         tCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGtt                                                                   <  1:550685/96‑1 (MQ=255)                                                                                                                                            gCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTAc                                                                            >  2:1091251/1‑84 (MQ=255)                                                                                                                                            gCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTAc                                                                            <  1:1091251/84‑1 (MQ=255)                                                                                                                                            gCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATGAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACg          >  1:663779/1‑150 (MQ=255)                                                                                                                                              ccATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAATCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGGCGGCCTCGATCTCGGTGTGAAAGCGGATCACGCCATCGTCACGCa        >  1:1120712/1‑150 (MQ=255)                                                                                                                                              ccATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCAt                                                                                           >  1:580315/1‑67 (MQ=255)                                                                                                                                              ccATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCAt                                                                                           <  2:580315/67‑1 (MQ=255)                                                                                                                                              ccATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCa        >  2:361694/1‑150 (MQ=255)                                                                                                                                                aTGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctgg                                                        <  2:187923‑M2/100‑58 (MQ=255)                                                                                                                                                aTGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctgg                                                        >  1:187923‑M2/1‑43 (MQ=255)                                                                                                                                                  gggCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctggcc                                                      >  2:181202‑M2/1‑41 (MQ=255)                                                                                                                                                  gggCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctggcc                                                      <  1:181202‑M2/100‑60 (MQ=255)                                                                                                                                                  gggCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGc    >  2:1025602/1‑150 (MQ=255)                                                                                                                                                    gCAccacgcttggcgccgacatctggctgaccaaggtactgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctggccctggcccacctgtggcaactggactgggacgaagaccgcctggccgcactgg  <  1:758338‑M1/150‑148 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CGCGTACGAACACCGGCACATCGGCGCCCAGGCTCAGGCCCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAA  >  NC_002947/840278‑840574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.