New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 840427	46 (1.020)	4 (0.090)	4/238	NT	7.8%	coding (278/861 nt)	ispE	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase
	?	NC_002947	= 840463	50 (1.150)					coding (242/861 nt)	ispE	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase

CCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCATGGTCTAGAAACTGAAAC  >  NC_002947/840317‑840609                                                                                                                                                   |                                                                                                                                                   ccAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgc                                                                                                                                                 <  1:758338‑M2/150‑4 (MQ=255)          ccAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATtgtg                                                                                                                                        >  1:1108653/1‑150 (MQ=255)             ggCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGAtt                                                                                                                                     <  2:1108653/150‑1 (MQ=255)              gCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCGGTCGATCGCTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTg                                                                                                                                    <  2:533815/150‑1 (MQ=255)                ggTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATtgtg                                                                                                                                        <  2:799950/144‑1 (MQ=255)                ggTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATtgtg                                                                                                                                        >  1:799950/1‑144 (MQ=255)                ggTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTgca                                                                                                                                  >  1:85065/1‑150 (MQ=255)                             gtccagtTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGc                                                                                                                     >  2:744817/1‑150 (MQ=255)                             gtccagtTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGc                                                                                                                     >  2:478129/1‑150 (MQ=255)                                  gcttgcgcaGTTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTa                                                                                                                >  2:47121/8‑150 (MQ=255)                                      ccACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGAt                                                                                                            <  2:364467/150‑1 (MQ=255)                                       cacaGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATc                                                                                                           >  2:683649/1‑150 (MQ=255)                                             tGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTg                                                                                                     >  1:1110607/1‑150 (MQ=255)                                                gccagggccagCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGACAAGCGTGGTTCGCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTg                                                                                                  >  2:635690/1‑150 (MQ=255)                                                   agggccagCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCg                                                                                               >  1:1119424/1‑150 (MQ=255)                                                           cagGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGAc                                                                                       <  2:556589/150‑1 (MQ=255)                                                                        gcgTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCg                                                                          <  2:85065/150‑1 (MQ=255)                                                                        gcgTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCg                                                                          <  1:478129/150‑1 (MQ=255)                                                                              gAGCTGCCACCGTCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCAGCAAGCCGACCCGAACCGCTTTTCCCGCTTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGc                                                                    <  1:744817/150‑1 (MQ=255)                                                                                      aCCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGAt                                                            >  1:92732/1‑150 (MQ=255)                                                                                       ccgccgATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGa                                                             >  1:1166544/1‑148 (MQ=255)                                                                                       ccgccgATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGa                                                             <  2:1166544/148‑1 (MQ=255)                                                                                         gccgATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCAc                                                         <  2:1143273/150‑1 (MQ=255)                                                                                          ccgATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACg                                                        >  1:210594/1‑150 (MQ=255)                                                                                            gATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGcc                                                      >  1:599029/1‑150 (MQ=255)                                                                                               aCCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATc                                                   <  2:599029/150‑1 (MQ=255)                                                                                                  tCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATgcgcg                                                                                                                         <  2:453274/77‑1 (MQ=255)                                                                                                  tCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATgcgcg                                                                                                                         >  1:453274/1‑77 (MQ=255)                                                                                                  tCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGtt                                                                                                      <  1:550685/96‑1 (MQ=255)                                                                                                  tCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGtt                                                                                                      >  2:550685/1‑96 (MQ=255)                                                                                                     gCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTAc                                                                                                               <  1:1091251/84‑1 (MQ=255)                                                                                                     gCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTAc                                                                                                               >  2:1091251/1‑84 (MQ=255)                                                                                                     gCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATGAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACg                                             >  1:663779/1‑150 (MQ=255)                                                                                                       ccATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAATCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGGCGGCCTCGATCTCGGTGTGAAAGCGGATCACGCCATCGTCACGCa                                           >  1:1120712/1‑150 (MQ=255)                                                                                                       ccATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCAt                                                                                                                              >  1:580315/1‑67 (MQ=255)                                                                                                       ccATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCAt                                                                                                                              <  2:580315/67‑1 (MQ=255)                                                                                                       ccATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCa                                           >  2:361694/1‑150 (MQ=255)                                                                                                         aTGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctgg                                                                                           >  1:187923‑M2/1‑43 (MQ=255)                                                                                                         aTGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctgg                                                                                           <  2:187923‑M2/100‑58 (MQ=255)                                                                                                           gggCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctggcc                                                                                         >  2:181202‑M2/1‑41 (MQ=255)                                                                                                           gggCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGtgcccatgggcggaggtatcggcggtggcagctcagacgccgcgaccaccctgctggcc                                                                                         <  1:181202‑M2/100‑60 (MQ=255)                                                                                                           gggCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGc                                       >  2:1025602/1‑150 (MQ=255)                                                                                                                   ccTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCa                               >  2:641199/1‑150 (MQ=255)                                                                                                                    cTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAg                              >  2:208730/1‑150 (MQ=255)                                                                                                                    cTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAg                              <  1:361694/150‑1 (MQ=255)                                                                                                                     ttGGTGAGCCAGAGCTCCGGGCGGAGCGTGGTGCCCGATTGTGCTTGCTGCATGCGGGCGGCCCGTACTTTCAGGTTGCTGTCGTTGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGt                             <  2:395899/150‑1 (MQ=255)                                                                                                                         tCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGCCACTCAGGGCAAAACGCAGTtcgt                         >  2:578669/1‑150 (MQ=255)                                                                                                                            gCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCacc                                                   <  2:806183/121‑3 (MQ=255)                                                                                                                            gCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATc                                                   >  1:806183/1‑121 (MQ=255)                                                                                                                                gATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCATg                  <  2:758338/150‑1 (MQ=255)                                                                                                                                 aTGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCATgg                 <  1:208730/150‑1 (MQ=255)                                                                                                                                  tGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGAGTCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCATGGt                <  1:578669/150‑1 (MQ=255)                                                                                                                                         gcCAAGCGTGGTGCCAGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCAt                   <  2:1017941/140‑1 (MQ=255)                                                                                                                                         gcCAAGCGTGGTGCCAGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCAt                   >  1:1017941/1‑140 (MQ=255)                                                                                                                                          ccAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCATGGTCTAGAAAc        <  2:713494/150‑1 (MQ=255)                                                                                                                                                gtggtgCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCATGGTCTAGAAACTGAAac  <  2:1119424/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCAGTGCGGCCAGGCGGTCTTCGTCCCAGTCCAGTTGCCACAGGTGGGCCAGGGCCAGCAGGGTGGTCGCGGCGTCTGAGCTGCCACCGCCGATACCTCCGCCCATGGGCAGTACCTTGGTCAGCCAGATGTCGGCGCCAAGCGTGGTGCCCGATTGTGCTTGCAGCATGCGCGCGGCCCGTACGATCAGGTTGCTGTCGTGGGGGACGGCCTCGATCTCGGTGTGCAAGCGGATCACGCCATCGTCACGCAGGGCAAAACTCAGTTCGTCGCCATGGTCTAGAAACTGAAAC  >  NC_002947/840317‑840609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.