New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 88386513 (0.290)13 (0.390) 9/184 NT 51.3% intergenic (+100/‑228) PP_0766/PP_0767 hypothetical protein/LuxR family transcriptional regulator
?NC_002947 = 883875 15 (0.450)intergenic (+110/‑218) PP_0766/PP_0767 hypothetical protein/LuxR family transcriptional regulator

AAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/883685‑883865
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcctcttcgcgggtgaacccgctcctacCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTGGAA  <  NC_002947/883875‑883727
                                                                                                                                                                                                                                                                                                                                          
AAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAC                                                                                                                                                                                      <  1:1015081/150‑1
     TGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGC                                                                                                                                                                                 >  1:962975/1‑150
        CTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTC                                                                                                                                                                              <  2:962975/150‑1
                         GTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGC                                                                                                                                                             <  2:262712/150‑1
                          TGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCT                                                                                                                                                            >  1:660219/1‑150
                              AGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                        <  2:718132/150‑1
                              AGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                        >  1:693566/1‑150
                              AGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                        >  1:566641/1‑150
                              AGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG                                                                                                                                                                       <  1:900265/135‑1
                              AGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG                                                                                                                                                                       >  2:900265/1‑135
                                CAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACC                                                                                                                                                      >  2:223431/1‑150
                                         TTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCT                                                                                                                                             <  2:310162/150‑1
                                           TCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGT                                                                                                                                           <  2:660219/150‑1
                                              AGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCT                                                                                                                                             <  1:276770/145‑1
                                              AGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCT                                                                                                                                             >  2:276770/1‑145
                                                   GCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTTAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                   <  1:223431/150‑1
                                                   GCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                   <  2:693566/150‑1
                                                   GCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                   <  2:810625/150‑1
                                                     AGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAG                                                                                                                                         >  1:620542/1‑142
                                                     AGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCCCGGGTGAACCCGCTCCTACCGCGGAAACTGTAG                                                                                                                                         <  2:620542/142‑1
                                                                  TCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG                                                                                                                                                                       <  2:145848/99‑1
                                                                  TCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG                                                                                                                                                                       >  1:145848/1‑99
                                                                            GCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCTGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 >  1:985848/1‑95
                                                                            GCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 <  2:985848/95‑1
                                                                                                            CCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                        <  2:593869/72‑1
                                                                                                            CCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                        >  1:593869/1‑72
                                                                                                            CCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 <  2:695977/63‑1
                                                                                                            CCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC                                                                                                                                                                 >  1:695977/1‑63
                                                                                                                                   GGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                   <  2:508435/70‑1
                                                                                                                                   GGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                   >  1:508435/1‑70
                                                                                                                                       TTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTC                                                                                                                               <  1:1068417/70‑1
                                                                                                                                       TTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTC                                                                                                                               >  2:1068417/1‑70
                                                                                                                                                                     GTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGA                          >  2:190010/1‑141
                                                                                                                                                                     GTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGA                          <  1:190010/141‑1
                                                                                                                                                                      TGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAG                                          <  2:561309/124‑1
                                                                                                                                                                      TGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAG                                          >  1:561309/1‑124
                                                                                                                                                                          CCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTG            >  1:52197/1‑150
                                                                                                                                                                           CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGC           >  2:566641/1‑150
                                                                                                                                                                             GCTCCTACCGCGGAAGCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGCAATAGAACCGCCCCGGGGAGCCCGGGCGTTCTGGGGTTGACACGGCGTGCAGTGATTTCAGCTGAGCGAATACCCGGCTGACGCAGCGATGCGG         >  2:365728/1‑150
                                                                                                                                                                                    CCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTGGAA  >  2:54400/1‑150
                                                                                                                                                                                                                                                                                                                                          
AAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/883685‑883865
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcctcttcgcgggtgaacccgctcctacCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTGGAA  <  NC_002947/883875‑883727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.