| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 883865 | 13 (0.290) | 13 (0.390) | 9/184 | NT | 51.3% | intergenic (+100/‑228) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947 | = 883875 | 15 (0.450) | intergenic (+110/‑218) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
TTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATG > NC_002947/883727‑884024 | ttCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGg > 2:54400‑M2/1‑149 (MQ=255) ccGCATCGCTGCGTCAGCCGGGTATTCGCTCAGCTGAAATCACTGCACGCCGTGTCAACCCCAGAACGCCCGGGCTCCCCGGGGCGGTTCTATTGCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCTTCCGCGgtaggagc > 2:365728‑M2/1‑142 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgg > 2:566641‑M2/1‑140 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcggg > 1:52197‑M2/1‑139 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcac < 1:190010‑M2/141‑17 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcac > 2:190010‑M2/1‑125 (MQ=255) cTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttca < 2:561309‑M2/124‑16 (MQ=255) cTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttca > 1:561309‑M2/1‑109 (MQ=255) tCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTACGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAACCAAcct > 2:118854/1‑150 (MQ=255) ccccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCa > 2:1135172/1‑150 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATc > 2:684416/1‑114 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATc < 1:684416/114‑1 (MQ=255) gACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTg < 1:1135172/150‑1 (MQ=255) ttCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTACGAGCGGGTTCACCCGCGAAGAGGCCCGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTCCTTCTTGTCGCAGTCgtt > 2:357403/1‑150 (MQ=255) gTGAACCCGCTCCTACAGGTTCCGCGGTAGGCGAAGTGTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCgcgc > 1:585360/1‑150 (MQ=255) gAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaa < 1:1068417‑M2/70‑47 (MQ=255) gAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaa > 2:1068417‑M2/1‑24 (MQ=255) gAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCt > 2:934832/1‑150 (MQ=255) cccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTAtt > 1:69089/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgc < 2:810625‑M2/150‑131 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgc < 2:693566‑M2/150‑131 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgcc > 1:508435‑M2/1‑20 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgcc < 2:508435‑M2/70‑51 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttaacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgc < 1:223431‑M2/150‑131 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAAcccc < 2:75693/89‑1 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAAcccc > 1:75693/1‑89 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:935961/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCCCGTAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCACTCTTTTCTGCGCCTATTg > 1:380306/1‑150 (MQ=255) cTACAGTTTCCGCGgtaggagcgggttcacccgggaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgct < 2:620542‑M2/142‑129 (MQ=255) cTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgct > 1:620542‑M2/1‑14 (MQ=255) aCAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggctgga < 2:660219‑M2/150‑139 (MQ=255) aGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggctggaaa < 2:310162‑M2/150‑141 (MQ=255) aGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggct < 1:276770‑M2/145‑136 (MQ=255) aGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggct > 2:276770‑M2/1‑10 (MQ=255) ggTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCatcatc > 1:681670/1‑150 (MQ=255) tCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGACGGCTAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTc < 2:585360/150‑1 (MQ=255) cgcgGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCa < 1:225662/115‑1 (MQ=255) cgcgGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCa > 2:225662/1‑115 (MQ=255) gcgGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCaaa > 2:319255/1‑150 (MQ=255) ggtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggctggaaatcggccttg > 2:223431‑M2/1‑1 (MQ=255) | TTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCATCTTCAAATG > NC_002947/883727‑884024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |