| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 883865 | 13 (0.290) | 13 (0.390) | 9/184 | NT | 51.3% | intergenic (+100/‑228) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947 | = 883875 | 15 (0.450) | intergenic (+110/‑218) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
CAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCA > NC_002947/883717‑884014 | cAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACc > 2:223431‑M1/1‑149 (MQ=255) tttCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacct < 2:310162‑M1/150‑11 (MQ=255) ttCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGg > 2:54400‑M2/1‑149 (MQ=255) tCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgt < 2:660219‑M1/150‑13 (MQ=255) aGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacct > 2:276770‑M1/1‑135 (MQ=255) aGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacct < 1:276770‑M1/145‑11 (MQ=255) ccGCATCGCTGCGTCAGCCGGGTATTCGCTCAGCTGAAATCACTGCACGCCGTGTCAACCCCAGAACGCCCGGGCTCCCCGGGGCGGTTCTATTGCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCTTCCGCGgtaggagc > 2:365728‑M2/1‑142 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTTAACCCGCTCCTACcgcggaacctgtaggagcgg < 1:223431‑M1/150‑21 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg < 2:810625‑M1/150‑21 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg < 2:693566‑M1/150‑21 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgg > 2:566641‑M2/1‑140 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcggg > 1:52197‑M2/1‑139 (MQ=255) aGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtag > 1:620542‑M1/1‑128 (MQ=255) aGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCCCGGGTGAACCCGCTCCTACcgcggaaactgtag < 2:620542‑M1/142‑15 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcac > 2:190010‑M2/1‑125 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcac < 1:190010‑M2/141‑17 (MQ=255) cTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttca > 1:561309‑M2/1‑109 (MQ=255) cTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttca < 2:561309‑M2/124‑16 (MQ=255) aTCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAg > 1:1153007/1‑96 (MQ=255) aTCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAg < 2:1153007/96‑1 (MQ=255) tCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTACGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAACCAAcct > 2:118854/1‑150 (MQ=255) ccccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCa > 2:1135172/1‑150 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATc < 1:684416/114‑1 (MQ=255) ccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATc > 2:684416/1‑114 (MQ=255) ggCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg > 1:508435‑M1/1‑50 (MQ=255) ggCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgg < 2:508435‑M1/70‑21 (MQ=255) tttCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgggttc > 2:1068417‑M1/1‑46 (MQ=255) tttCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACcgcggaacctgtaggagcgggttc < 1:1068417‑M1/70‑25 (MQ=255) gACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTg < 1:1135172/150‑1 (MQ=255) ttCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTACGAGCGGGTTCACCCGCGAAGAGGCCCGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTCCTTCTTGTCGCAGTCgtt > 2:357403/1‑150 (MQ=255) gTGAACCCGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccga > 2:190010‑M1/1‑16 (MQ=255) gTGAACCCGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccga < 1:190010‑M1/141‑126 (MQ=255) gTGAACCCGCTCCTACAGGTTCCGCGGTAGGCGAAGTGTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCgcgc > 1:585360/1‑150 (MQ=255) tGAACCCGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcag < 2:561309‑M1/124‑110 (MQ=255) tGAACCCGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcag > 1:561309‑M1/1‑15 (MQ=255) gAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaa < 1:1068417‑M2/70‑47 (MQ=255) gAACCCGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaa > 2:1068417‑M2/1‑24 (MQ=255) gAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCt > 2:934832/1‑150 (MQ=255) cccGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctg > 1:52197‑M1/1‑11 (MQ=255) cccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTAtt > 1:69089/1‑150 (MQ=255) ccGCTCCTACcgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgc > 2:566641‑M1/1‑10 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgc < 2:810625‑M2/150‑131 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgc < 2:693566‑M2/150‑131 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgcc < 2:508435‑M2/70‑51 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgcc > 1:508435‑M2/1‑20 (MQ=255) ccGCTCCTACAGGTTCCGCGgtaggagcgggttaacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgc < 1:223431‑M2/150‑131 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAAcccc > 1:75693/1‑89 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAAcccc < 2:75693/89‑1 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:935961/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCCCGTAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCACTCTTTTCTGCGCCTATTg > 1:380306/1‑150 (MQ=255) gCTCCTACcgcggaagctgtaggagcgggttcacccgcgaagaggccgggtcaggcaatagaaccgccccggggagcccgggcgttctggggttgacacggcgtgcagtgatttcagctgagcgaatacccggctgacgcagcgatgcgg > 2:365728‑M1/1‑8 (MQ=255) cTACAGTTTCCGCGgtaggagcgggttcacccgggaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgct < 2:620542‑M2/142‑129 (MQ=255) cTACAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgct > 1:620542‑M2/1‑14 (MQ=255) aCAGGTTCCGCGgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggctgga < 2:660219‑M2/150‑139 (MQ=255) ccgcggaacctgtaggagcgggttcacccgcgaagaggccgggtcaggaaatagaaacgccccggcgagccggggcgttctggggatcacacggcgttcagtgatttcagcttagcgaatacccgactgacgcagcgctgcgggctggaa > 2:54400‑M1/1‑1 (MQ=255) | CAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCA > NC_002947/883717‑884014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |