| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1009824 = | 34 (0.750) | 3 (0.070) | 3/232 | NT | 8.4% | coding (515/942 nt) | PP_0870 | glycine betaine/carnitine/choline ABC transporter substrate‑binding protein |
| ? | NC_002947 | 1009864 = | 34 (0.810) | coding (475/942 nt) | PP_0870 | glycine betaine/carnitine/choline ABC transporter substrate‑binding protein | |||||
CAAAAAAGACCTGATCTGGCTGACCCCGTCGAAATTCAGCAACACCTATGCCCTCGGCTTGCCGAAGCAGGTCGCCGAGGCCTACCCGCAGATCAACTCGATCAGCGACCTCAACCAGGTGCTGCGCGACGAGCGCAAGCGTAATCACCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1009976‑1009824‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctggtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGTGGCCT > NC_002947/1009864‑1010010 CAAAAAAGACCTGATCTGGCTGACCCCGTCGAAATTCAGCAACACCTATGCCCTCGGCTTGCCGAAGCAGGTCGCCGAGGCCTACCCGCAGATCAACTCGATCAGCGACCTCAACCAGGTGCTGCGCGACGAGCGCAAGCGTAATCACCT > 1:428796/1‑150 AAAAGACCTGATCTGGCTGACCCCGTCGAAATTCAGCAACACCTATGCCCTCGGCTTGCCGAAGCAGGTCGCCGAGGCCTACCCGCAGATCAACTCGATCAGCGACCTCAACCAGGTGCTGCGCGACGAGCGCAAGCGTAATCACCTGGT < 2:428796/150‑1 AAAAGACCTGATCTGGCTGACCCCGTCGAAATTCAGCAACACCTATGCCCTCGGCTTGCCGAAGCAGGTCGCCGAGGCCTACCCGCAGATCAACTCGATCAGCGACCTCAACCAGGTGCTGCGCGACGAGCGCAAGCGTAATCACCTGGT < 2:625959/150‑1 CTCAACCAGGTGCTGCGCGACGAGCGCAAGCGTAATCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTC > 2:721747/1‑150 TCAACCAGGTGCTGCGCGACGAGCGCAAGCGTAATCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTCCGGAAAGCCGTTTTCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCT > 2:937912/1‑150 AACCAGGTGCTGCGCGACGAGCGCAAGCGTAATCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTT < 1:721747/150‑1 CACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGT < 1:171701/150‑1 ACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGTG < 2:515936/150‑1 GGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGTGGCCT > 1:150290/1‑150 GTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCT < 1:780834/109‑1 GTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCT > 2:780834/1‑109 CAAAAAAGACCTGATCTGGCTGACCCCGTCGAAATTCAGCAACACCTATGCCCTCGGCTTGCCGAAGCAGGTCGCCGAGGCCTACCCGCAGATCAACTCGATCAGCGACCTCAACCAGGTGCTGCGCGACGAGCGCAAGCGTAATCACCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1009976‑1009824‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctggtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGTGGCCT > NC_002947/1009864‑1010010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |