New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1009824 =	34 (0.750)	3 (0.070)	3/232	NT	8.4%	coding (515/942 nt)	PP_0870	glycine betaine/carnitine/choline ABC transporter substrate‑binding protein
	?	NC_002947	1009864 =	34 (0.810)					coding (475/942 nt)	PP_0870	glycine betaine/carnitine/choline ABC transporter substrate‑binding protein

CAGGCCCGCGTCCATCTGGCGGATGTTGGCGCGGCCGACCTGCAGGTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGTGGCCT  >  NC_002947/1009715‑1010010                                                                                                                                                      |                                                                                                                                                   aaagacctgatctggctgaccccgtcgaaattcagcaacacctatgccctcggcttgccgaagcaggtcgccgaggcctacccgcagatcaactcgatcagcgacctcaACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGtt                                                                                                                                                    <  1:721747‑M1/41‑1 (MQ=255)   ggCCCGCGTCCATCTGGCGGATGTTGGCGCGGCCGACCTGCAGGTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGa                                                                                                                                                  <  1:468217/150‑1 (MQ=255)   ggCCCGCGTCCATCTGGCGGATGTTGGCGCGGCCGACCTGCAGGTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGa                                                                                                                                                  <  2:819123/150‑1 (MQ=255)   agacctgatctggctgaccccgtcgaaattcagcaacacctatgaaaacggctttccggagcaggtcgccgaggcctacccgcagatcaactcgatcagcgacctcaACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGa                                                                                                                                                  >  2:937912‑M1/108‑150 (MQ=255)    gacctgatctggctgaccccgtcgaaattcagcaacacctatgccctcggcttgccgaagcaggtcgccgaggcctacccgcagatcaactcgatcagcgacctcaACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAg                                                                                                                                                 >  2:721747‑M1/107‑150 (MQ=255)                          ttGGCGCGGCCGACCTGCAGGTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGc                                                                                                                           <  2:283414/150‑1 (MQ=255)                           tGGCGCGGCCGACCTGCAGGTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCg                                                                                                                          <  1:1163585/150‑1 (MQ=255)                            ggCGCGGCCGACCTGCAGGTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCgg                                                                                                                         <  2:700234/150‑1 (MQ=255)                                cgGCCGACCTGCAGGTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAg                                                                                                                     <  1:1145458/150‑1 (MQ=255)                                              gTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTg                                                                                                       >  2:1022710/1‑150 (MQ=255)                                               tCGTACATTTCCTTGAGCCCGACCAGGCACCGGGCCCAGCAAGCGGACTCGGTGTCCCGGGCCACCAGGTGATCACGACTGTGGCCAACCTGTACCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGCAGACCTCGGCGACCTGc                                                                                                      >  1:1178486/1‑150 (MQ=255)                                                     aTTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGc                                                                                                >  1:638843/1‑150 (MQ=255)                                                                cccGACCAAGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGc                                                                                     <  1:417013/150‑1 (MQ=255)                                                                 ccGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCa                                                                                    >  1:289085/1‑150 (MQ=255)                                                                 ccGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGAAGACGATCAGTAAGTTCGCTGATTGAGTTGATCTGCGGGTCGACGTCGATGACCTCGTTCGGCTAGCCGAGGGCa                                                                                    >  1:327795/1‑150 (MQ=255)                                                                    aCCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAg                                                                                 <  2:289085/150‑1 (MQ=255)                                                                      cAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGgt                                                                               >  2:202902/1‑150 (MQ=255)                                                                       aGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGATTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGgtg                                                                              >  2:438341/1‑150 (MQ=255)                                                                       aGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGACTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGgtg                                                                              <  1:1167118/150‑1 (MQ=255)                                                                         gCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGAcc                                                                                                         >  1:180901/1‑121 (MQ=255)                                                                         gCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGAcc                                                                                                         <  2:180901/121‑1 (MQ=255)                                                                           cGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGc                                                                          <  1:1021694/150‑1 (MQ=255)                                                                            gTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGAt                                                                                                                               >  1:212690/1‑96 (MQ=255)                                                                            gTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGAt                                                                                                                               <  2:212690/96‑1 (MQ=255)                                                                                 ggCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAAtt                                                                    >  2:304339/1‑150 (MQ=255)                                                                                    ggTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCg                                                                 >  1:1035589/1‑150 (MQ=255)                                                                                        ggCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACgg                                                             <  1:202902/150‑1 (MQ=255)                                                                                             aCTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCa                                                        <  1:438341/150‑1 (MQ=255)                                                                                                      ccAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCa                                               <  1:538038/150‑1 (MQ=255)                                                                                                       cAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAg                                              >  1:168535/1‑150 (MQ=255)                                                                                                         gagCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGt                                            <  2:327795/150‑1 (MQ=255)                                                                                                          ctcaaccaggtgctgcgcgacgagcgcaagcgtaatcacctggtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTc                                           >  2:721747‑M2/45‑150 (MQ=255)                                                                                                           tcaaccaggtgctgcgcgacgagcgcaagcgtaatcacctggtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTCCGGAAAGCCGTTTTCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCt                                          >  2:937912‑M2/44‑150 (MQ=255)                                                                                                             aaccaggtgctgcgcgacgagcgcaagcgtaatcacctggtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCttt                                        <  1:721747‑M2/109‑1 (MQ=255)                                                                                                              ACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCtttt                                       <  2:428796‑M1/150‑1 (MQ=255)                                                                                                              ACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCtttt                                       <  2:625959‑M1/150‑1 (MQ=255)                                                                                                                 AGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTg                                    >  1:428796‑M1/1‑150 (MQ=255)                                                                                                                      aTTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATc                               <  2:168535/150‑1 (MQ=255)                                                                                                                       ttACGCGTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTTATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGATGGCATAGGTGTTGCTGAATTTCGACGTGGTCAGCCAGATCAGGTCTTTTTTGGCAtac                              <  2:252043/150‑3 (MQ=255)                                                                                                                           gCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCt                          >  1:515936/1‑150 (MQ=255)                                                                                                                             ttGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTcc                        <  1:304339/150‑1 (MQ=255)                                                                                                                                 gcTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCttttt                                      >  2:407338/1‑132 (MQ=255)                                                                                                                                 gcTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCttttt                                      <  1:407338/132‑1 (MQ=255)                                                                                                                                     gtcgCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATa                                                                                  <  1:1009781/84‑1 (MQ=255)                                                                                                                                     gtcgCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATa                                                                                  >  2:1009781/1‑84 (MQ=255)                                                                                                                                              cacctggtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGt       <  1:171701‑M2/142‑1 (MQ=255)                                                                                                                                               acctggtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGTg      <  2:515936‑M2/143‑1 (MQ=255)                                                                                                                                                   ggtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGTGGCCt  >  1:150290‑M2/4‑150 (MQ=255)                                                                                                                                                    gtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCt                                          <  1:780834‑M2/107‑1 (MQ=255)                                                                                                                                                    gtTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCt                                          >  2:780834‑M2/3‑109 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CAGGCCCGCGTCCATCTGGCGGATGTTGGCGCGGCCGACCTGCAGGTCGTACATTTCCTTGAGCCCGACCAGGCCGTCGGGGCGGTTGGCGAACTCGGTGTCCAGAGCCACCAGGTGATTACGCTTGCGCTCGTCGCGCAGCACCTGGTTGAGGTCGCTGATCGAGTTGATCTGCGGGTAGGCCTCGGCGACCTGCTTCGGCAAGCCGAGGGCATAGGTGTTGCTGAATTTCGACGGGGTCAGCCAGATCAGGTCTTTTTTGGCATCCAGCTCCTTGACCTTGGCGTAAGTGGCCT  >  NC_002947/1009715‑1010010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.