New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1201848 =	41 (0.910)	4 (0.090)	4/238	NT	10.0%	coding (246/591 nt)	xcpW	type II secretion pathway protein XcpW
	?	NC_002947	1201887 =	33 (0.760)					coding (285/591 nt)	xcpW	type II secretion pathway protein XcpW

CAGCGGCGTACAGGTCCGCCGAGCTTTCCAGCAGCAGGCGTTGCTCGCGGGCCTCGAACCGCAGGCGCTGGCGTTGCAGGCGCGAGCCACCTTCGGCTGCCGGCAGGCCGGTGCTGGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1201999‑1201848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCG  >  NC_002947/1201887‑1202032                                                                                                                                                                                                                                                                                                            CAGCGGCGTACAGGTCCGCCGAGCTTTCCAGCAGCAGGCGTTGCTCGCGGGCCTCGAACCGCAGGCGCTGGCGTTGCAGGCGCGAGCCACCTTCGGCTGCCGGCAGGCCGGTGCTGGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCC                                                                                                                                                      >  2:1183852/1‑150                                                                                                                   TGGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGA                                                                               <  1:932369/107‑1                                                                                                                   TGGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGA                                                                               >  2:932369/1‑107                                                                                                                    GGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTC                                                                                          >  1:469371/1‑95                                                                                                                    GGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTC                                                                                          <  2:469371/95‑1                                                                                                                                                    GCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACTCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTC   <  1:5565/150‑1                                                                                                                                                     CCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCG  >  2:282275/1‑150                                                                                                                                                     CCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGC            >  1:47764/1‑140                                                                                                                                                     CCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGC            <  2:47764/140‑1                                                                                                                                                                                                                                                                                                            CAGCGGCGTACAGGTCCGCCGAGCTTTCCAGCAGCAGGCGTTGCTCGCGGGCCTCGAACCGCAGGCGCTGGCGTTGCAGGCGCGAGCCACCTTCGGCTGCCGGCAGGCCGGTGCTGGCGACCCACAGCAACTGGTTGCTGGCGGGCTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1201999‑1201848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCG  >  NC_002947/1201887‑1202032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.