New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1201848 =	41 (0.910)	4 (0.090)	4/238	NT	10.0%	coding (246/591 nt)	xcpW	type II secretion pathway protein XcpW
	?	NC_002947	1201887 =	33 (0.760)					coding (285/591 nt)	xcpW	type II secretion pathway protein XcpW

GCTGGCTGAAGGTGCGCGAACGCCTGCAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCT  >  NC_002947/1201700‑1201988                                                                                                                                                     |                                                                                                                                             gctggctgAAGGTGCGCGAACGCCTGCAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACt                                                                                                                                             >  2:776753/1‑150 (MQ=255)   tggctgAAGGTGCGCGAACGCCTGCAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTgg                                                                                                                                           <  2:849098/150‑1 (MQ=255)   cgagtcgttcgcgctgtacccagcgcggggcgccagcggcgtacaggtccgccgagctttccagcagcaggcgttgctcgcgggcctcgaaccgcaggcgctggcgttgcaggcgcgagccaccttcggctgccggcaggccggtgCTgg                                                                                                                                           >  2:282275‑M1/147‑150 (MQ=255)    gagtcgttcgcgctgtacccagcgcggggcgccagcggagtacaggtccgccgagctttccagcagcaggcgttgctcgcgggcctcgaaccgcaggcgctggcgttgcaggcgcgagccaccttcggctgccggcaggccggtgCTGGc                                                                                                                                          <  1:5565‑M1/5‑1 (MQ=255)     gctgAAGGTGCGCGAACGCCTGCAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCa                                                                                                                                         >  2:921536/1‑150 (MQ=255)         aaGGTGCGCGAACGCCTGCAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGccc                                                                                                                                     <  1:776753/150‑1 (MQ=255)             gcgctgtacccagcgcggggcgccagcggcgtacaggtccgccgagctttccagcagcaggcgttgctcgcgggcctcgaaccgcaggcgctggcgttgcaggcgcgagccaccttcggctgccggcaggccggtgCTgg                                                                                                                                           <  2:47764‑M1/4‑1 (MQ=255)             gcgctgtacccagcgcggggcgccagcggcgtacaggtccgccgagctttccagcagcaggcgttgctcgcgggcctcgaaccgcaggcgctggcgttgcaggcgcgagccaccttcggctgccggcaggccggtgCTgg                                                                                                                                           >  1:47764‑M1/137‑140 (MQ=255)                gcgAACGCCTGCAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCa                                                                                                                              >  2:721307/1‑150 (MQ=255)                       ccTGCAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGtt                                                                                                                       >  1:476809/1‑150 (MQ=255)                           cAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCtg                                                                                                                   >  2:56545/1‑150 (MQ=255)                              gACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGTTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTgg                                                                                                                >  2:899940/1‑150 (MQ=255)                              gACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTgg                                                                                                                <  2:480668/150‑1 (MQ=255)                               ccaccacTGCGCAAATCTCGTTGCTGGACTTTTACCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTggg                                                                                                               <  2:373435/149‑1 (MQ=255)                                 accacTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTc                                                                                                             >  1:1132145/1‑150 (MQ=255)                                   cacTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCa                                                                                                                                         >  1:155477/1‑120 (MQ=255)                                   cacTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCa                                                                                                                                         <  2:155477/120‑1 (MQ=255)                                         gCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCAc                                                                                                     >  2:626176/1‑150 (MQ=255)                                             aTCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGc                                                                                                 <  2:476809/150‑1 (MQ=255)                                                              ttGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCGGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAgg                                                                                <  2:76555/150‑1 (MQ=255)                                                                   tGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAAc                                                                                                                            >  2:944186/1‑101 (MQ=255)                                                                   tGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAAc                                                                                                                            <  1:944186/101‑1 (MQ=255)                                                                       ccTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTcgcg                                                                       >  2:579177/1‑150 (MQ=255)                                                                        cTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCgcgc                                                                      <  2:246391/150‑1 (MQ=255)                                                                           gAGCCGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTg                                                                   <  2:489985/150‑1 (MQ=255)                                                                                tcgcgggcctcgaaccgcaggcgctggcgttgcaggcgcgagccaccttcggctgccggcaggccggtgCTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCa                                                                                                         <  1:932369‑M1/38‑1 (MQ=255)                                                                                tcgcgggcctcgaaccgcaggcgctggcgttgcaggcgcgagccaccttcggctgccggcaggccggtgCTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCa                                                                                                         >  2:932369‑M1/70‑107 (MQ=255)                                                                                 cgcTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGc                                                             <  2:1092762/150‑1 (MQ=255)                                                                                   cTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAg                                                                                 >  2:333738/1‑128 (MQ=255)                                                                                   cTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAg                                                                                 <  1:333738/128‑1 (MQ=255)                                                                                   cTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCa                                                           >  1:488013/1‑150 (MQ=255)                                                                                        aCAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGcc                                                      >  1:1015240/1‑150 (MQ=255)                                                                                           gaaccgcaggcgctggcgttgcaggcgcgagccaccttcggctgccggcaggccggtgCTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGcc                                                                                                          <  2:469371‑M1/37‑1 (MQ=255)                                                                                           gaaccgcaggcgctggcgttgcaggcgcgagccaccttcggctgccggcaggccggtgCTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGcc                                                                                                          >  1:469371‑M1/59‑95 (MQ=255)                                                                                                  gctgcGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGT‑GGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAg                                           <  1:56545/150‑1 (MQ=255)                                                                                                           tgtCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGa                                   >  2:1190638/1‑150 (MQ=255)                                                                                                            gtCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAg                                  <  1:921536/150‑1 (MQ=255)                                                                                                               tACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAg                                                                                                                         >  2:822444/1‑60 (MQ=255)                                                                                                               tACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAg                                                                                                                         <  1:822444/60‑1 (MQ=255)                                                                                                               tACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCaa                               >  1:818294/1‑150 (MQ=255)                                                                                                                  gACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCaa                                                                                                                             <  1:1024354/53‑1 (MQ=255)                                                                                                                  gACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCaa                                                                                                                             >  2:1024354/1‑53 (MQ=255)                                                                                                                   aCCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGAATGGCCGCCCGCCACCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGACGCCCGCGAGCAACGcc                           >  2:139667/1‑150 (MQ=255)                                                                                                                    ccAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCct                          >  1:865325/1‑150 (MQ=255)                                                                                                                                acTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAg              >  2:840804/2‑150 (MQ=255)                                                                                                                                     ccAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTcgg         >  1:458746/1‑150 (MQ=255)                                                                                                                                         ccGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGTAACGCCTGCTGCTGGAAAGCTCGGCGGa     >  1:1072731/1‑150 (MQ=255)                                                                                                                                         ccGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGATCGGCGGa     >  2:631407/1‑150 (MQ=255)                                                                                                                                           gTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGAc    >  2:141221/1‑149 (MQ=255)                                                                                                                                           gTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGAc    <  1:141221/149‑1 (MQ=255)                                                                                                                                            ttGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCt  <  1:1190638/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             GCTGGCTGAAGGTGCGCGAACGCCTGCAGGACACCACTCGGCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCT  >  NC_002947/1201700‑1201988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.