New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1201848 =	41 (0.910)	4 (0.090)	4/238	NT	10.0%	coding (246/591 nt)	xcpW	type II secretion pathway protein XcpW
	?	NC_002947	1201887 =	33 (0.760)					coding (285/591 nt)	xcpW	type II secretion pathway protein XcpW

GCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCA  >  NC_002947/1201740‑1202036                                                                                                                                                    |                                                                                                                                                      gCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCAc                                                                                                                                                     >  2:626176/1‑150 (MQ=255)     aTCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGc                                                                                                                                                 <  2:476809/150‑1 (MQ=255)                      ttGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCGGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAgg                                                                                                                                <  2:76555/150‑1 (MQ=255)                               ccTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTcgcg                                                                                                                       >  2:579177/1‑150 (MQ=255)                                cTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCgcgc                                                                                                                      <  2:246391/150‑1 (MQ=255)                                   gAGCCGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTg                                                                                                                   <  2:489985/150‑1 (MQ=255)                                         cgcTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGc                                                                                                             <  2:1092762/150‑1 (MQ=255)                                           cTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAg                                                                                                                                 <  1:333738/128‑1 (MQ=255)                                           cTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAg                                                                                                                                 >  2:333738/1‑128 (MQ=255)                                           cTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCa                                                                                                           >  1:488013/1‑150 (MQ=255)                                                aCAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGcc                                                                                                      >  1:1015240/1‑150 (MQ=255)                                                          gctgcGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGT‑GGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAg                                                                                           <  1:56545/150‑1 (MQ=255)                                                                   tgtCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGa                                                                                   >  2:1190638/1‑150 (MQ=255)                                                                    gtCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAg                                                                                  <  1:921536/150‑1 (MQ=255)                                                                       tACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCaa                                                                               >  1:818294/1‑150 (MQ=255)                                                                           aCCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGAATGGCCGCCCGCCACCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGACGCCCGCGAGCAACGcc                                                                           >  2:139667/1‑150 (MQ=255)                                                                            ccAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCct                                                                          >  1:865325/1‑150 (MQ=255)                                                                                        acTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAg                                                              >  2:840804/2‑150 (MQ=255)                                                                                             ccAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTcgg                                                         >  1:458746/1‑150 (MQ=255)                                                                                                 ccGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGTAACGCCTGCTGCTGGAAAGCTCGGCGGa                                                     >  1:1072731/1‑150 (MQ=255)                                                                                                 ccGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGATCGGCGGa                                                     >  2:631407/1‑150 (MQ=255)                                                                                                   gTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGAc                                                    <  1:141221/149‑1 (MQ=255)                                                                                                   gTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGAc                                                    >  2:141221/1‑149 (MQ=255)                                                                                                    ttGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCt                                                  <  1:1190638/150‑1 (MQ=255)                                                                                                              tggcgacccacagcaactggttgctggcgggctgccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGa                                                                                   <  1:932369‑M2/69‑1 (MQ=255)                                                                                                              tggcgacccacagcaactggttgctggcgggctgccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGa                                                                                   >  2:932369‑M2/39‑107 (MQ=255)                                                                                                               ggcgacccacagcaactggttgctggcgggctgccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTc                                                                                              <  2:469371‑M2/58‑1 (MQ=255)                                                                                                               ggcgacccacagcaactggttgctggcgggctgccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTc                                                                                              >  1:469371‑M2/38‑95 (MQ=255)                                                                                                               GGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTg                                       >  2:1183852‑M1/1‑150 (MQ=255)                                                                                                                  aGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGgcg                                    >  2:1085868/1‑150 (MQ=255)                                                                                                                  aGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGgcg                                    >  2:213698/1‑150 (MQ=255)                                                                                                                   gCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGTAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGgcgc                                   <  2:1072731/150‑1 (MQ=255)                                                                                                                     ccGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGccc                                 >  1:8144/1‑150 (MQ=255)                                                                                                                               ccAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAg                                                                                           <  1:96741/82‑1 (MQ=255)                                                                                                                               ccAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAg                                                                                           >  2:96741/1‑82 (MQ=255)                                                                                                                               ccAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGc                                                                                         <  2:1138447/84‑1 (MQ=255)                                                                                                                               ccAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGc                                                                                         >  1:1138447/1‑84 (MQ=255)                                                                                                                                       tgtgGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGcgcg               >  1:392172/1‑150 (MQ=255)                                                                                                                                         tgGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGaa             <  1:579177/150‑1 (MQ=255)                                                                                                                                               gccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACTCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTc       <  1:5565‑M2/145‑1 (MQ=255)                                                                                                                                                ccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAgcgc                <  2:47764‑M2/136‑1 (MQ=255)                                                                                                                                                ccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAgcgc                >  1:47764‑M2/5‑140 (MQ=255)                                                                                                                                                ccagCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCg      >  2:282275‑M2/5‑150 (MQ=255)                                                                                                                                                    cACCTGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCa  <  1:721307/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GCAAATCTCGGTGCTGGACTTTTGCCTGGCCCTGGAGCGGCGCTTCGACAGCCCGGTGCTGCGCCGTGTCTACGACCAGCGTCTGCCGCTGGCCAGCCGTTGGCTGGACTGGCAGCCCGCCAGCAACCAGTTGCTGTGGGTCGCCAGCACCGGCCTGCCGGCAGCCGAAGGTGGCTCGCGCCTGCAACGCCAGCGCCTGCGGTTCGAGGCCCGCGAGCAACGCCTGCTGCTGGAAAGCTCGGCGGACCTGTACGCCGCTGGCGCCCCGCGCTGGGTACAGCGCGAACGACTCGACCA  >  NC_002947/1201740‑1202036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.