| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1711779 = | 43 (0.950) | 3 (0.070) | 3/238 | NT | 7.2% | coding (2356/2628 nt) | ppc | phosphoenolpyruvate carboxylase |
| ? | NC_002947 | 1711821 = | 36 (0.830) | coding (2398/2628 nt) | ppc | phosphoenolpyruvate carboxylase | |||||
TCCAGATAGGTATTGCGCAGGCTAATGAATTCCAGTGTCTCGGGGCTGTGCGCCAGTAGCACCGGCTGCCCGGTCAGGCCCAGCACCACCTGGCATGACTGCGACAATAGGTCGCGCAGGTGCGCACCTAAAGGACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1711918‑1711779‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTGGCCCGCTCGCGCAGCCGC > NC_002947/1711821‑1711967 TCCAGATAGGTATTGCGCAGGCTAATGAATTCCAGTGTCTCGGGGCTGTGCGCCAGTAGCACCGGCTGCCCGGTCAGGCCCAGCACCACCTGGCATGACTGCGACAATAGGTCGCGCAGGTGCGCACCTAAAGGACGCAG > 1:1056601/1‑140TCCAGATAGGTATTGCGCAGGCTAATGAATTCCAGTGTCTCGGGGCTGTGCGCCAGTAGCACCGGCTGCCCGGTCAGGCCCAGCACCACCTGGCATGACTGCGACAATAGGTCGCGCAGGTGCGCACCTAAAGGACGCAG < 2:1056601/140‑1 GCATGACTGCGACAATAGGCCGCGCAGGTGCGCACCTAAAGGACGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCT < 1:9255/143‑1 GCATGACTGCGACAATAGGCCGCGCAGGTGCGCACCTAAAGGACGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCT > 2:9255/1‑143 TGACTGCGACAATAGGTCGCGCAGGTGCGCACCTAAAGGACGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGGCGG‑GCTGATGGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTG > 1:379948/1‑150 CAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTGGCCCGCTCGCGCAGCCGC > 2:217188/1‑150 TCCAGATAGGTATTGCGCAGGCTAATGAATTCCAGTGTCTCGGGGCTGTGCGCCAGTAGCACCGGCTGCCCGGTCAGGCCCAGCACCACCTGGCATGACTGCGACAATAGGTCGCGCAGGTGCGCACCTAAAGGACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1711918‑1711779‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTGGCCCGCTCGCGCAGCCGC > NC_002947/1711821‑1711967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |