New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1711779 =	43 (0.950)	3 (0.070)	3/238	NT	7.2%	coding (2356/2628 nt)	ppc	phosphoenolpyruvate carboxylase
	?	NC_002947	1711821 =	36 (0.830)					coding (2398/2628 nt)	ppc	phosphoenolpyruvate carboxylase

CAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTGGCCCGCTCGCGCAGCCGC  >  NC_002947/1711674‑1711967                                                                                                                                                    |                                                                                                                                                    caacgggtccagataggtattgcgcaggctaatgaattccagtgtctcggggctgtgcgcccatcagcccgcctgcccggtcaggcccagcaccacctggcatgaCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCa                                                                                                                                                   >  1:379948‑M1/106‑150 (MQ=255)     ggCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGCCCTATTGTCGCAGTCATGcc                                                                                                                                               >  1:214287/1‑150 (MQ=255)       ccGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAg                                                                                                                                             <  2:605024/150‑1 (MQ=255)       ccGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGATGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAg                                                                                                                                             <  1:33737/150‑1 (MQ=255)          ttcttcCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAggtg                                                                                                                                          >  2:916125/1‑150 (MQ=255)           agataggtattgcgcaggctaatgaattccagtgtctcggggctgtgcgccagtagcaccggctgcccggtcaggcccagcaccacctggcatgaCTGCGTCCTTTAGGTGCGCACCTGCGCGGCCTATTGTCGCAGTCATGc                                                                                                                                                >  2:9255‑M1/96‑143 (MQ=255)           agataggtattgcgcaggctaatgaattccagtgtctcggggctgtgcgccagtagcaccggctgcccggtcaggcccagcaccacctggcatgaCTGCGTCCTTTAGGTGCGCACCTGCGCGGCCTATTGTCGCAGTCATGc                                                                                                                                                <  1:9255‑M1/48‑1 (MQ=255)                 gCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTgg                                                                                                                                   >  1:33205/1‑150 (MQ=255)                 gCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTgg                                                                                                                                   >  2:936038/1‑150 (MQ=255)                                   tGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCgg                                                                                                                 >  2:467025/1‑150 (MQ=255)                                     gAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTg                                                                                                               >  2:611447/1‑150 (MQ=255)                                     gAAATGGTGCTGGCCAAGGCCGATGCGCAAATGGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTg                                                                                                               <  2:514918/150‑1 (MQ=255)                                                  ccAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGcaca                                                                                                 >  1:36311/1‑150 (MQ=255)                                                   cAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAg                                                                                                >  2:219820/1‑150 (MQ=255)                                                         cGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCga                                                                                          <  1:99967/150‑1 (MQ=255)                                                         cGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCga                                                                                          <  2:214287/150‑1 (MQ=255)                                                           aTGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACTTGTTTGCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCgaga                                                                                        <  1:265217/150‑1 (MQ=255)                                                               gcAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCt                                                                                                                                     >  2:259526/1‑102 (MQ=255)                                                               gcAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCt                                                                                                                                     <  1:259526/102‑1 (MQ=255)                                                                cAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTg                                                                                   <  1:219820/150‑1 (MQ=255)                                                                        cGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCAt                                                                           <  2:33205/150‑1 (MQ=255)                                                                              cTACGACGAACGTCTGGTACAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCt                                                                     >  2:379288/1‑150 (MQ=255)                                                                              cTACGACGAACGTCTGGGGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCt                                                                     >  1:817967/1‑150 (MQ=255)                                                                                     gaACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAAt                                                              <  1:660549/150‑1 (MQ=255)                                                                                          tCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTa                                                         >  2:985286/1‑150 (MQ=255)                                                                                           cTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTAt                                                        <  2:36311/150‑1 (MQ=255)                                                                                             ggTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCt                                                      <  2:1131195/150‑1 (MQ=255)                                                                                                 cAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGAc                                                  <  1:611447/150‑1 (MQ=255)                                                                                                    gcatgactgcgacaataggccgcgcaggtgcgcacctaaaggacgcagTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCt                                                      <  1:9255‑M2/95‑1 (MQ=255)                                                                                                    gcatgactgcgacaataggccgcgcaggtgcgcacctaaaggacgcagTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCt                                                      >  2:9255‑M2/49‑143 (MQ=255)                                                                                                    ccGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAg                                                                                                <  2:939770/101‑1 (MQ=255)                                                                                                    ccGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAg                                                                                                >  1:939770/1‑101 (MQ=255)                                                                                                       tgactgcgacaataggtcgcgcaggtgcgcacctaaaggacgcagTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGGCGG‑GCTGATGGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTg                                            >  1:379948‑M2/46‑150 (MQ=255)                                                                                                        aCCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGc                                           >  1:935645/1‑150 (MQ=255)                                                                                                          CTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGa                                                   <  2:1056601‑M1/140‑1 (MQ=255)                                                                                                          CTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGa                                                   >  1:1056601‑M1/1‑140 (MQ=255)                                                                                                                         gcgcACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGgcg                                                                                                     >  2:506495/1‑75 (MQ=255)                                                                                                                         gcgcACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGgcg                                                                                                     <  1:506495/75‑1 (MQ=255)                                                                                                                              ccTGCGCGACCTATTGTCGCAGTCCTCCTAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCt                     <  1:306342/150‑1 (MQ=255)                                                                                                                               cTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTg                                                     <  2:160875/117‑1 (MQ=255)                                                                                                                               cTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTg                                                     >  1:160875/1‑117 (MQ=255)                                                                                                                               cTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTg                    <  2:817967/150‑1 (MQ=255)                                                                                                                                tGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTCTCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTgg                   <  2:696639/150‑1 (MQ=255)                                                                                                                                tGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTgg                   >  1:696639/1‑150 (MQ=255)                                                                                                                                           ttGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGTAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTGGCCCGCTCgcgc        >  1:940597/1‑150 (MQ=255)                                                                                                                                             gTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCACGCAGAGTTGCTGGCCCGCCCGCGGAg      >  2:5893/1‑150 (MQ=255)                                                                                                                                                 cagTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTGGCCCGCTCGCGCAGCcgc  >  2:217188‑M2/4‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCT‑ACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGCACCGCCTGCAGGCAGAGTTGCTGGCCCGCTCGCGCAGCCGC  >  NC_002947/1711674‑1711967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.