New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1711779 =	43 (0.950)	3 (0.070)	3/238	NT	7.2%	coding (2356/2628 nt)	ppc	phosphoenolpyruvate carboxylase
	?	NC_002947	1711821 =	36 (0.830)					coding (2398/2628 nt)	ppc	phosphoenolpyruvate carboxylase

CTTGGCCCGAGGTCAGGGTGAGTTGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGC  >  NC_002947/1711631‑1711926                                                                                                                                                     |                                                                                                                                                    cTTGGCCCGAGGTCAGGGTGAGTTGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCt                                                                                                                                                    <  2:158130/150‑1 (MQ=255)  gcggctgcgcgagcgggccagcaactctgcctgcaggcggtgcaacgggtccagataggtattgcgcaggctaatgaattccagtgtctcggggctgtgcgccagtagcaccggctgcccggtcaggcccagcaccacctggcatgaCTg                                                                                                                                                   >  2:217188‑M1/148‑150 (MQ=255)   tGGCCCGAGGTCAGGGTGAGTTGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGc                                                                                                                                                  <  2:1184344/150‑1 (MQ=255)     gCCCGAGGTCAGGGTGAGTTGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCAAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGt                                                                                                                                                >  1:499506/1‑150 (MQ=255)       ccGAGGTCAGGGTGAGTTGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGGACAACCGCGCCTGCGGcc                                                                                                                                              >  2:278214/1‑150 (MQ=255)           ggTCAGGGTGAGTTGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTa                                                                                                                                          <  2:232058/150‑1 (MQ=255)              cAGGGTGAGTTGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAACTTGCCTATGCCTAGGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGt                                                                                                                                       <  1:329438/150‑1 (MQ=255)                       ttGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTgc                                                                                                                                     <  2:599438/143‑1 (MQ=255)                       ttGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTgc                                                                                                                                     >  1:599438/1‑143 (MQ=255)                           tGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGcgcg                                                                                                                          >  2:127500/1‑150 (MQ=255)                             gCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGAc                                                                                                                        <  2:1001093/150‑1 (MQ=255)                              cacaGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGAcc                                                                                                                       >  2:660549/1‑150 (MQ=255)                               acaGATGCGCGAGCAATGGCCGTTCTTCCTCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGAc                                                                                                                        >  1:309893/1‑148 (MQ=255)                               acaGATGCGCGAGCAATGGCCGTTCTTCCTCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGAc                                                                                                                        <  2:309893/148‑1 (MQ=255)                                  gATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGGAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTAtt                                                                                                                   <  2:875187/150‑1 (MQ=255)                                            caacgggtccagataggtattgcgcaggctaatgaattccagtgtctcggggctgtgcgcccatcagcccgcctgcccggtcaggcccagcaccacctggcatgaCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCa                                                                                                         >  1:379948‑M1/106‑150 (MQ=255)                                                ggCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGCCCTATTGTCGCAGTCATGcc                                                                                                     >  1:214287/1‑150 (MQ=255)                                                  ccGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAg                                                                                                   <  2:605024/150‑1 (MQ=255)                                                  ccGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGATGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAg                                                                                                   <  1:33737/150‑1 (MQ=255)                                                   cGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTa                                                                                                                     >  2:319869/1‑131 (MQ=255)                                                   cGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTa                                                                                                                     <  1:319869/131‑1 (MQ=255)                                                     ttcttcCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAggtg                                                                                                >  2:916125/1‑150 (MQ=255)                                                      agataggtattgcgcaggctaatgaattccagtgtctcggggctgtgcgccagtagcaccggctgcccggtcaggcccagcaccacctggcatgaCTGCGTCCTTTAGGTGCGCACCTGCGCGGCCTATTGTCGCAGTCATGc                                                                                                      <  1:9255‑M1/48‑1 (MQ=255)                                                      agataggtattgcgcaggctaatgaattccagtgtctcggggctgtgcgccagtagcaccggctgcccggtcaggcccagcaccacctggcatgaCTGCGTCCTTTAGGTGCGCACCTGCGCGGCCTATTGTCGCAGTCATGc                                                                                                      >  2:9255‑M1/96‑143 (MQ=255)                                                            gCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTgg                                                                                         >  2:936038/1‑150 (MQ=255)                                                            gCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTgg                                                                                         >  1:33205/1‑150 (MQ=255)                                                                           tGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCa                                                                                                             >  1:839275/1‑115 (MQ=255)                                                                           tGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCa                                                                                                             <  2:839275/115‑1 (MQ=255)                                                                              tGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCgg                                                                       >  2:467025/1‑150 (MQ=255)                                                                                gAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCt                                                                                                                                                    <  2:794591/71‑1 (MQ=255)                                                                                gAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCt                                                                                                                                                    >  1:794591/1‑71 (MQ=255)                                                                                gAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTg                                                                     >  2:611447/1‑150 (MQ=255)                                                                                gAAATGGTGCTGGCCAAGGCCGATGCGCAAATGGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTg                                                                     <  2:514918/150‑1 (MQ=255)                                                                                             ccAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGcaca                                                        >  1:36311/1‑150 (MQ=255)                                                                                              cAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAg                                                       >  2:219820/1‑150 (MQ=255)                                                                                                    cGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCga                                                 <  2:214287/150‑1 (MQ=255)                                                                                                    cGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCga                                                 <  1:99967/150‑1 (MQ=255)                                                                                                      aTGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACTTGTTTGCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCgaga                                               <  1:265217/150‑1 (MQ=255)                                                                                                          gcAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCt                                                                                           <  1:259526/102‑1 (MQ=255)                                                                                                          gcAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCt                                                                                           >  2:259526/1‑102 (MQ=255)                                                                                                           cAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTg                                          <  1:219820/150‑1 (MQ=255)                                                                                                                   cGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCAt                                  <  2:33205/150‑1 (MQ=255)                                                                                                                         cTACGACGAACGTCTGGTACAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCt                            >  2:379288/1‑150 (MQ=255)                                                                                                                         cTACGACGAACGTCTGGGGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCt                            >  1:817967/1‑150 (MQ=255)                                                                                                                                gaACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAAt                     <  1:660549/150‑1 (MQ=255)                                                                                                                                     tCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTa                >  2:985286/1‑150 (MQ=255)                                                                                                                                      cTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTAt               <  2:36311/150‑1 (MQ=255)                                                                                                                                        ggTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCt             <  2:1131195/150‑1 (MQ=255)                                                                                                                                            cAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGAc         <  1:611447/150‑1 (MQ=255)                                                                                                                                               ccGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAg                                                       >  1:939770/1‑101 (MQ=255)                                                                                                                                               ccGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAg                                                       <  2:939770/101‑1 (MQ=255)                                                                                                                                                   aCCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGc  >  1:935645/1‑150 (MQ=255)                                                                                                                                                     CTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGa          >  1:1056601‑M1/1‑140 (MQ=255)                                                                                                                                                     CTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGa          <  2:1056601‑M1/140‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTTGGCCCGAGGTCAGGGTGAGTTGCTGGCACAGATGCGCGAGCAATGGCCGTTCTTCCGCACCCGCATCGACATGCTGGAAATGGTGCTGGCCAAGGCCGATGCGCAAATTGCCGAGGCCTACGACGAACGTCTGGTGCAACCGCACCTGCGTCCTTTAGGTGCGCACCTGCGCGACCTATTGTCGCAGTCATGCCAGGTGGTGCTGGGCCTGACCGGGCAGCCGGTGCTACTGGCGCACAGCCCCGAGACACTGGAATTCATTAGCCTGCGCAATACCTATCTGGACCCGTTGC  >  NC_002947/1711631‑1711926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.