| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1747734 = | 65 (1.440) | 4 (0.090) | 4/236 | NT | 6.5% | intergenic (‑184/+347) | PP_5473/PP_5474 | LuxR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 1747807 = | 53 (1.230) | intergenic (‑257/+274) | PP_5473/PP_5474 | LuxR family transcriptional regulator/hypothetical protein | |||||
ATCACACACCCATGCAGACCTTAAGGTGCAAGCCCGTGCGCCTTACAGCCCATAAGACCCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1747888‑1747734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcagTCGGTTTAAGGTTGATGGGGATGGGTCTTATGGGCTGTAAGGCGCACGGGCTTGCACCTTAAGGTCTGCATGG > NC_002947/1747807‑1747879 ATCACACACGCGATCGGACCTTAAGGTGCAAGCCCGGGCGCCTTACAGCCCATAAGACCCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAA < 1:548109/150‑1ATCACACACCCATGCAGACCTTAAGGTGCAAGCCCGTGCGCCTTACAGCCCATAAGACCCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAA > 1:201626/1‑150ATCACACACCCATGCAGACCTTAAGGTGCAAGCCCGTGCGCCTTACAGCCCATAAGACCCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAA > 2:539332/1‑150 ACACACCCATGCAGACCTTAAGGTGCAAGCCCGTGCGCCTTACAGCCCATAAGACCCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGC > 1:794053/1‑150 aACACCCATGCAGACCTTAAGGTGCAAGCCCGTGCGCCTTACAGCCCATAAGACCCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCA > 1:602394/2‑150 CACACCCATGCAGACCTTAAGGTGCAAGCCCGTGCGCCTTACAGCCCATAAGACCCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCA < 2:71887/150‑1 CCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAAT > 1:920402/1‑93 CCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAAT < 2:920402/93‑1 GTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGTCGGTTTAAGGTTGATGGGGATGGGTCTTATGGGCTGTAAGGCGCACGGGCTTGCACCTTAAGGTCTGCATGG > 1:741567/1‑135 GTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGTCGGTTTAAGGTTGATGGGGATGGGTCTTATGGGCTGTAAGGCGCACGGGCTTGCACCTTAAGGTCTGCATGG < 2:741567/135‑1 ACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGTCGGTTTAAGGTTGATGGGGATGGGTCTTATGGGCTGTAAGGCGCACGGGCTTGCACCTTAAG < 1:814904/122‑1 ACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGTCGGTTTAAGGTTGATGGGGATGGGTCTTATGGGCTGTAAGGCGCACGGGCTTGCACCTTAAG > 2:814904/1‑122 ATCACACACCCATGCAGACCTTAAGGTGCAAGCCCGTGCGCCTTACAGCCCATAAGACCCATCCCCATCAACCTTAAACCGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1747888‑1747734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcagTCGGTTTAAGGTTGATGGGGATGGGTCTTATGGGCTGTAAGGCGCACGGGCTTGCACCTTAAGGTCTGCATGG > NC_002947/1747807‑1747879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |