New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1801199 =	41 (0.910)	4 (0.090)	4/238	NT	9.8%	coding (1141/3525 nt)	dnaEA	DNA polymerase III subunit alpha
	?	NC_002947	1801232 =	34 (0.790)					coding (1174/3525 nt)	dnaEA	DNA polymerase III subunit alpha

CTGGCTCACCGCGTTACGGCCGTAGGCCTCAGCCACGTAGTCGATCACCCGGTCACGGCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGAAACACGTTCAGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1801351‑1801199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgagCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGGCCGCC  >  NC_002947/1801232‑1801378                                                                                                                                                                                                                                                                                                              CTGGCTCACCGCGTTACGGCCGTAGGCCTCAGCCACGTAGTCGATCACCCGGTCACGGCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGAAACACGTTCAGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTC                                                                                                                                                        <  2:292813/150‑1                                                                                                      GTTCAGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGA                                                                     <  1:108219/132‑1                                                                                                      GTTCAGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGA                                                                     >  2:108219/1‑132                                                                                                                              ACAGCAGGTCGTAGGCCAGCGGGTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGA                                                                         <  1:624219/104‑1                                                                                                                              ACAGCAGGTCGTAGGCCAGCGGGTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGA                                                                         >  2:624219/1‑104                                                                                                                                                      CGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGGCCGC   <  1:373940/150‑1                                                                                                                                                       GAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTAGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGGCCGCC  >  2:850234/1‑150                                                                                                                                                                                                                                                                                                              CTGGCTCACCGCGTTACGGCCGTAGGCCTCAGCCACGTAGTCGATCACCCGGTCACGGCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGAAACACGTTCAGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1801351‑1801199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgagCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGGCCGCC  >  NC_002947/1801232‑1801378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.