New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1801199 =	41 (0.910)	4 (0.090)	4/238	NT	9.8%	coding (1141/3525 nt)	dnaEA	DNA polymerase III subunit alpha
	?	NC_002947	1801232 =	34 (0.790)					coding (1174/3525 nt)	dnaEA	DNA polymerase III subunit alpha

GACATCATCATCCAGATGGGCTTCCCCGGTTACTTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGT  >  NC_002947/1801052‑1801344                                                                                                                                                    |                                                                                                                                                  ggcggccatggtaccgaaggtgatgatctggctcaccgcgttacggccgtaggcctcagccacgtagtcgatcacccggtcacggccgtccatgcagaagtcgacgtctaagtcgggcatggaaacacgttcagggttgaggaagcgCTc                                                                                                                                                 >  2:850234‑M1/148‑150 (MQ=255)  gcggccatggtaccgaaggtgatgatctggctcaccgcgttacggccgtaggcctcagccacgtagtcgatcacccggtcacggccgtccatgcagaagtcgacgtcgaagtcgggcatggaaacacgttcagggttgaggaagcgCTCg                                                                                                                                                <  1:373940‑M1/4‑1 (MQ=255)    atcatcatcCAGATGGGCTTCCCCGGTTACTTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACGGAtctgggc                                                                                                                                              >  2:433775/1‑146 (MQ=255)     tcatcatcCAGATGGGCTTCCCCGGTTACTTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGAcc                                                                                                                                             >  2:817398/1‑150 (MQ=255)      catcatcCAGATGGGCTTCCCCGGTTACTTCATGATTGTTATGGAATTGATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCCCGCTGGTGGCCTATGTTCTGAAAATTACCGATCTCGAccc                                                                                                                                            >  2:212475/1‑150 (MQ=255)        tcatcCAGATGGGCTTCCCCGGTTACTTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGc                                                                                                                                          >  2:1034172/1‑150 (MQ=255)          atcCAGATGGGCTTCCCCGGTTACTTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTTGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTg                                                                                                                                        >  2:1000303/1‑150 (MQ=255)             cAGATGGGCTTCCCCTGTTACTTCCTGATTGTGATGGTCTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGcc                                                                                                                                     <  1:433775/150‑1 (MQ=255)               gATGGGCTTCCCCGGTTACTTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGCAGATCACCGATCTCGACCCGCTGGCCTa                                                                                                                                   >  2:167793/1‑150 (MQ=255)                      ttCCCCGGTTACTTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACctg                                                                                                                            <  2:550544/150‑1 (MQ=255)                         cccGGTTACTTCCTGATTGTTATGGCCTTCATCAAATGGGCCAAGAAAAACGACATACCGGTGGGCCCGGGTCGTGGTGCGGGTGCCGGCTCGCTGGTGGCCTATGCCCTGACGATCACCGATCTCGACCCGCTGGCCTACGACctgctg                                                                                                                         <  1:167793/150‑1 (MQ=255)                                  ttCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAgcgc                                                                                                                >  2:607874/1‑150 (MQ=255)                                      tGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTcc                                                                                                            <  2:659137/150‑1 (MQ=255)                                            ttATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAAcc                                                                                                      <  1:1092903/150‑1 (MQ=255)                                                 gACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGaa                                                                                                 <  1:212475/150‑1 (MQ=255)                                                    ttCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACgt                                                                                              >  1:531306/1‑150 (MQ=255)                                                        tcaAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGa                                                                                                                                               <  2:734409/97‑1 (MQ=255)                                                        tcaAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGa                                                                                                                                               >  1:734409/1‑97 (MQ=255)                                                        tcaAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTc                                                                                                                      >  2:893869/1‑122 (MQ=255)                                                        tcaAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTc                                                                                                                      <  1:893869/122‑1 (MQ=255)                                                        tcaAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGGTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGttt                                                                                          >  2:367505/1‑150 (MQ=255)                                                          aaaTGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTcc                                                                                        >  2:687221/1‑150 (MQ=255)                                                                 ccAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCAt                                                                                      <  1:1080178/145‑1 (MQ=255)                                                                 ccAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCAt                                                                                      >  2:1080178/1‑145 (MQ=255)                                                                 ccAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCg                                                                                 >  1:405022/1‑150 (MQ=255)                                                                  cAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGa                                                                                >  2:1120179/1‑150 (MQ=255)                                                                    tcgatcacccggtcacggccgtccatgcagaagtcgacgtcgaagtcgggcatggaaacacgttcagggttgaggaagcgCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAAc                                                                                                <  1:108219‑M1/52‑1 (MQ=255)                                                                    tcgatcacccggtcacggccgtccatgcagaagtcgacgtcgaagtcgggcatggaaacacgttcagggttgaggaagcgCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAAc                                                                                                >  2:108219‑M1/81‑132 (MQ=255)                                                                    agcacaatGACGTACGGCTGGGCCAGGGACGTGGTTAGGGTGCCGGCGCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGAGCAGCTCTTCGAGCGCTTCCTCAAACCTCAACGTGTTTCCATGCCCGACt                                                                              >  2:300137/4‑150 (MQ=255)                                                                        tcacccggtcacggccgtccatgcagaagtcgacgtcgaagtcgggcatggaaacacgttcagggttgaggaagcgCTCGACCCGCTGGCCTACGACCTGCTGt                                                                                                                        <  1:624219‑M1/28‑1 (MQ=255)                                                                        tcacccggtcacggccgtccatgcagaagtcgacgtcgaagtcgggcatggaaacacgttcagggttgaggaagcgCTCGACCCGCTGGCCTACGACCTGCTGt                                                                                                                        >  2:624219‑M1/77‑104 (MQ=255)                                                                               gTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGAc                                                                   >  2:583799/1‑150 (MQ=255)                                                                                      tGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCa                                                            <  1:1120179/150‑1 (MQ=255)                                                                                      tGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCAATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCa                                                            <  1:317403/150‑1 (MQ=255)                                                                                                              ccGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCg                                    >  1:1075980/1‑150 (MQ=255)                                                                                                                ggCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGa                                   <  1:502920/149‑1 (MQ=255)                                                                                                                ggCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGa                                   >  2:502920/1‑149 (MQ=255)                                                                                                                   tCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGCCGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTAc                               <  1:817398/150‑1 (MQ=255)                                                                                                                     gCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACg                              <  1:821016/149‑1 (MQ=255)                                                                                                                     gCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACg                              >  2:821016/1‑149 (MQ=255)                                                                                                                       tggtggCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTgg                           <  1:607874/150‑1 (MQ=255)                                                                                                                          tggCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTg                        >  2:133316/1‑150 (MQ=255)                                                                                                                           ggCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGa                       <  1:133316/150‑1 (MQ=255)                                                                                                                           ggCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGa                       <  1:1000303/150‑1 (MQ=255)                                                                                                                                aTGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTc                                                                            >  2:794957/1‑92 (MQ=255)                                                                                                                                aTGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTc                                                                            <  1:794957/92‑1 (MQ=255)                                                                                                                                     cTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGc             >  1:171280/1‑150 (MQ=255)                                                                                                                                     cTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGc             >  2:546274/1‑150 (MQ=255)                                                                                                                                     cTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGc             >  2:182554/1‑150 (MQ=255)                                                                                                                                              aCCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAAcgcg    <  1:583799/150‑1 (MQ=255)                                                                                                                                                cGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGt  >  2:713850/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GACATCATCATCCAGATGGGCTTCCCCGGTTACTTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGT  >  NC_002947/1801052‑1801344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.