New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1801199 =	41 (0.910)	4 (0.090)	4/238	NT	9.8%	coding (1141/3525 nt)	dnaEA	DNA polymerase III subunit alpha
	?	NC_002947	1801232 =	34 (0.790)					coding (1174/3525 nt)	dnaEA	DNA polymerase III subunit alpha

TTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGGCCGCC  >  NC_002947/1801085‑1801378                                                                                                                                                    |                                                                                                                                                   ttCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAgcgc                                                                                                                                                  >  2:607874/1‑150 (MQ=255)     tGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTcc                                                                                                                                              <  2:659137/150‑1 (MQ=255)           ttATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAAcc                                                                                                                                        <  1:1092903/150‑1 (MQ=255)                gACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGaa                                                                                                                                   <  1:212475/150‑1 (MQ=255)                   ttCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACgt                                                                                                                                >  1:531306/1‑150 (MQ=255)                       tcaAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGGTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGttt                                                                                                                            >  2:367505/1‑150 (MQ=255)                         aaaTGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTcc                                                                                                                          >  2:687221/1‑150 (MQ=255)                                ccAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCAt                                                                                                                        >  2:1080178/1‑145 (MQ=255)                                ccAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCAt                                                                                                                        <  1:1080178/145‑1 (MQ=255)                                ccAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCg                                                                                                                   >  1:405022/1‑150 (MQ=255)                                 cAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGa                                                                                                                  >  2:1120179/1‑150 (MQ=255)                                   tcgatcacccggtcacggccgtccatgcagaagtcgacgtcgaagtcgggcatggaaacacgttcagggttgaggaagcgCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAAc                                                                                                                                  <  1:108219‑M1/52‑1 (MQ=255)                                   tcgatcacccggtcacggccgtccatgcagaagtcgacgtcgaagtcgggcatggaaacacgttcagggttgaggaagcgCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAAc                                                                                                                                  >  2:108219‑M1/81‑132 (MQ=255)                                   agcacaatGACGTACGGCTGGGCCAGGGACGTGGTTAGGGTGCCGGCGCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGAGCAGCTCTTCGAGCGCTTCCTCAAACCTCAACGTGTTTCCATGCCCGACt                                                                                                                >  2:300137/4‑150 (MQ=255)                                              gTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGAc                                                                                                     >  2:583799/1‑150 (MQ=255)                                                     tGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCa                                                                                              <  1:1120179/150‑1 (MQ=255)                                                     tGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCAATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCa                                                                                              <  1:317403/150‑1 (MQ=255)                                                                             ccGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCg                                                                      >  1:1075980/1‑150 (MQ=255)                                                                               ggCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGa                                                                     <  1:502920/149‑1 (MQ=255)                                                                               ggCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGa                                                                     >  2:502920/1‑149 (MQ=255)                                                                                  tCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGCCGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTAc                                                                 <  1:817398/150‑1 (MQ=255)                                                                                    gCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACg                                                                >  2:821016/1‑149 (MQ=255)                                                                                    gCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACg                                                                <  1:821016/149‑1 (MQ=255)                                                                                      tggtggCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTgg                                                             <  1:607874/150‑1 (MQ=255)                                                                                         tggCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTg                                                          >  2:133316/1‑150 (MQ=255)                                                                                          ggCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGa                                                         <  1:1000303/150‑1 (MQ=255)                                                                                          ggCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGa                                                         <  1:133316/150‑1 (MQ=255)                                                                                               aTGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTc                                                                                                              >  2:794957/1‑92 (MQ=255)                                                                                               aTGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTc                                                                                                              <  1:794957/92‑1 (MQ=255)                                                                                                gttcagggttgaggaagcgctcgaacagcaggtcgtaggccagcgggtcgagCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGa                                                                     >  2:108219‑M2/53‑132 (MQ=255)                                                                                                gttcagggttgaggaagcgctcgaacagcaggtcgtaggccagcgggtcgagCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGa                                                                     <  1:108219‑M2/80‑1 (MQ=255)                                                                                                    cTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGc                                               >  2:182554/1‑150 (MQ=255)                                                                                                    cTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGc                                               >  2:546274/1‑150 (MQ=255)                                                                                                    cTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGc                                               >  1:171280/1‑150 (MQ=255)                                                                                                             aCCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAAcgcg                                      <  1:583799/150‑1 (MQ=255)                                                                                                               cGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGt                                    >  2:713850/1‑150 (MQ=255)                                                                                                                      GACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAg                             <  2:292813‑M1/150‑1 (MQ=255)                                                                                                                        acagcaggtcgtaggccagcgggtcgagCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGa                                                                         <  1:624219‑M2/76‑1 (MQ=255)                                                                                                                        acagcaggtcgtaggccagcgggtcgagCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGa                                                                         >  2:624219‑M2/29‑104 (MQ=255)                                                                                                                                 cTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTTAt                                                                        <  2:1152909/96‑1 (MQ=255)                                                                                                                                 cTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGAt                                                                        >  1:1152909/1‑96 (MQ=255)                                                                                                                                        ctgctgTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTAcc           <  1:546274/150‑1 (MQ=255)                                                                                                                                              ttCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGgcc     >  1:1046626/1‑150 (MQ=255)                                                                                                                                                cgagCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGgccgc   <  1:373940‑M2/146‑1 (MQ=255)                                                                                                                                                 gagCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTAGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGgccgcc  >  2:850234‑M2/4‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TTCCTGATTGTTATGGACTTCATCAAATGGGCCAAGAACAACGACGTACCGGTGGGCCCGGGTCGTGGTTCGGGTGCCGGCTCGCTGGTGGCCTATGTCCTGAAGATCACCGATCTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCCATGCCCGACTTCGACGTCGACTTCTGCATGGACGGCCGTGACCGGGTGATCGACTACGTGGCTGAGGCCTACGGCCGTAACGCGGTGAGCCAGATCATCACCTTCGGTACCATGGCCGCC  >  NC_002947/1801085‑1801378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.