New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1885242	49 (1.090)	7 (0.160) +CACGGC	4/236	NT	10.5%	intergenic (+163/‑134)	PP_1692/rmuC	hypothetical protein/DNA recombination limiting inversions protein
	?	NC_002947	5756478 =	76 (1.680)					intergenic (+99/‑589)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

CCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1885155‑1885242 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTG  >  NC_002947/5756478‑5756538                                                                                         ||||||                                                              CCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGG                               <  1:92119/126‑1 CCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGG                               >  2:92119/1‑126                                                          CCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAG                                     >  1:94396/1‑63                                                          CCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAG                                     <  2:94396/63‑1                                                                   gaGCGGGTTTACCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTG  <  2:8417/87‑1                                                                              CCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGG                               <  1:21939/49‑1                                                                              CCCGCTCCTACCACGGCGTGGACACACATCGCGGTCGTCGTAGGAGCGG                               >  2:21939/1‑49                                                                                         ||||||                                                              CCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1885155‑1885242 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTG  >  NC_002947/5756478‑5756538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.