New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1885242	49 (1.090)	7 (0.160) +CACGGC	4/236	NT	10.5%	intergenic (+163/‑134)	PP_1692/rmuC	hypothetical protein/DNA recombination limiting inversions protein
	?	NC_002947	5756478 =	76 (1.680)					intergenic (+99/‑589)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

CGGGCCCTTTCGCGAGCAATCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCAATTTGCATCAGAGCGTTCGGGGTAAGCATGACAGTGGATCT  >  NC_002947/1885095‑1885389                                                                                                                                                    |                                                                                                                                                    cGGGCCCTTTCGCGAGCAATCACCGATGTGTGTCCACCGTCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGCCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGTTGTACCCGGTCCTACgg                                                                                                                                                   <  2:979881/150‑1 (MQ=18)  gggCCCTTTCGCGAGCAATCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACggg                                                                                                                                                  >  2:794392/1‑150 (MQ=255)              gAGCAATCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAgg                                                                                                                                      >  1:424251/1‑150 (MQ=255)              gAGCAATCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTCCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAgg                                                                                                                                      <  1:629789/150‑1 (MQ=255)                gCAATCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCa                                                                                                                                    >  1:810350/1‑150 (MQ=255)                gCAATCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCAGGCCTCTTGGCGGGTGAACACGATCCTACGGGCGACCGTGCAGGCa                                                                                                                                    >  1:810224/1‑150 (MQ=255)                 cAATCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCAt                                                                                                                                   <  2:424251/150‑1 (MQ=255)                  aaTCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCATCGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCAtt                                                                                                                                  <  2:37058/150‑1 (MQ=255)                  aaTCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCAtt                                                                                                                                  >  2:1155705/1‑150 (MQ=255)                    tCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTAc                                                                                                                                >  1:36235/1‑150 (MQ=255)                     ttccGATCTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTAcc                                                                                                                               <  1:1163867/148‑1 (MQ=255)                       ccGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCtt                                                                                                                             >  1:656406/1‑150 (MQ=255)                        cGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCttt                                                                                                                            <  2:105757/150‑1 (MQ=255)                                gtCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAg                                                                                                                    <  1:725356/150‑1 (MQ=255)                                gtCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAg                                                                                                                    <  1:725401/150‑1 (MQ=255)                                    aCCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCtt                                                                                                                >  1:415950/1‑150 (MQ=255)                                            ggTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCg                                                                                                        <  2:274464/150‑1 (MQ=255)                                                         ttACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGa                                                                                           >  1:995075/1‑150 (MQ=255)                                                           aCCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATg                                                                                         <  1:794392/150‑1 (MQ=255)                                                             ccGCGAGTACGGTGGCGGAGACTACGGTGCATTGCGGGTGGAGATTGGCCAGCCGGCCCGGTCTCTTCGCGGGTGACCCCGCTCCTACGGGCGACCGGGCAGTCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAg                                                                                       <  1:968004/150‑1 (MQ=255)                                                             ccGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTAAACCCGCTCCTACcacggcgtggacacacatcgcggtcgtcgtaggagcgg                                                                                                               >  2:92119‑M1/1‑88 (MQ=255)                                                             ccGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTAAACCCGCTCCTACcacggcgtggacacacatcgcggtcgtcgtaggagcgg                                                                                                               <  1:92119‑M1/126‑39 (MQ=255)                                                              cgcgAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAgg                                                                                      <  2:656406/150‑1 (MQ=255)                                                              cgcgAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCCTGCGCAGCGGGCAGGCCCACGATGAgg                                                                                      <  2:36235/150‑1 (MQ=255)                                                               gcgAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCa                                                                                                                     <  1:503475/118‑1 (MQ=255)                                                               gcgAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCa                                                                                                                     >  2:503475/1‑118 (MQ=255)                                                                   aTACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAg                                                                                       >  2:1057174/1‑144 (MQ=255)                                                                   aTACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAg                                                                                       <  1:1057174/144‑1 (MQ=255)                                                                       ggTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAg                                                                             <  2:995885/150‑1 (MQ=255)                                                                        gTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAg                                                                                                                                       >  2:99972/1‑91 (MQ=255)                                                                        gTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAg                                                                                                                                       <  1:99972/91‑1 (MQ=255)                                                                           gcggcggcAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCaa                                                                         >  1:673614/1‑150 (MQ=255)                                                                            cggcggcAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAac                                                                        <  2:415950/150‑1 (MQ=255)                                                                                      ggTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCa                                                              <  2:995075/150‑1 (MQ=255)                                                                                      ggTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCa                                                              <  1:1191140/150‑1 (MQ=255)                                                                                              gCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATa                                                      >  2:423867/1‑150 (MQ=255)                                                                                                 ggTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGc                                                   <  2:810350/150‑1 (MQ=255)                                                                                                        aTTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTc                                            >  2:154683/1‑150 (MQ=255)                                                                                                          tGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCaa                                          <  2:443908/150‑1 (MQ=255)                                                                                                          tGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCaa                                          <  1:183579/150‑1 (MQ=255)                                                                                                            gCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGc                                                                    >  1:573072/1‑122 (MQ=255)                                                                                                            gCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGc                                                                    <  2:573072/122‑1 (MQ=255)                                                                                                            gCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCAAtt                                        >  1:149610/1‑150 (MQ=255)                                                                                                             ccAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCAAttt                                       >  1:184323/1‑150 (MQ=255)                                                                                                                    gCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTg                                                 >  2:1029297/1‑133 (MQ=255)                                                                                                                    gCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTg                                                 <  1:1029297/133‑1 (MQ=255)                                                                                                                      ccGGCCTCTTCGCGGGTGAACCCGCTCCTACcacggcgtggacacacatcgcggtcgtcgtag                                                                                                                     >  1:94396‑M1/1‑31 (MQ=255)                                                                                                                      ccGGCCTCTTCGCGGGTGAACCCGCTCCTACcacggcgtggacacacatcgcggtcgtcgtag                                                                                                                     <  2:94396‑M1/63‑33 (MQ=255)                                                                                                                      ccGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCAATTTGCATCagag                              >  1:639787/1‑150 (MQ=255)                                                                                                                         gCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCAATTTGCATCAGAGCGt                           >  2:1154197/1‑150 (MQ=255)                                                                                                                            tctTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGc                                                                           <  2:33324/99‑1 (MQ=255)                                                                                                                            tctTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGc                                                                           >  1:33324/1‑99 (MQ=255)                                                                                                                               gagcgggTTTACCCGCTCCTACcacggcgtggacacacatcgcggtcgtcgtaggagcgggttcacccgcgaagaggccgggcctgctg                                                                                  <  2:8417‑M1/87‑68 (MQ=255)                                                                                                                                 gcgGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGAt                                                                                 >  1:84513/1‑88 (MQ=255)                                                                                                                                 gcgGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGAt                                                                                 <  2:84513/88‑1 (MQ=255)                                                                                                                                          cccGCTCCTACcacggcgtggacacacatcgcggtcgtcgtaggagcgg                                                                                                               <  1:21939‑M1/49‑39 (MQ=255)                                                                                                                                          cccGCTCCTACcacggcgtggacacacatcgcggtcgtcgtaggagcgg                                                                                                               >  2:21939‑M1/1‑11 (MQ=255)                                                                                                                                             gCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCGTGGAGGGTAGCGCATCGGGCAGTCCAACGATGAGGCGGCTGGCGGCCGGCGTCCAGGTAGGCTGATAAGCTGCACTCAATTTGCATCAGCGCGTTCGGGGTAAGCATGACAGTg       >  1:275154/1‑150 (MQ=255)                                                                                                                                                  tACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCAATTTGCATCAGAGCGTTCGGGGTAAGCATGACAGTGGATCt  <  1:1155705/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGGGCCCTTTCGCGAGCAATCACCGATGTGTGTCCACCGCCGTGGTAGGCGCGGGTTTACCCGCGAATACGGTGGCGGCGGCAACGGTGAATGGCGGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGCGACCGTGCAGGCATTACCTTTGCCTTCAGGCTTGCGCAGCGGGCAGGCCCACGATGAGGCCGATGCAGGCAACACGCCAGTCAGGCTGATAAGCTGCACTCAATTTGCATCAGAGCGTTCGGGGTAAGCATGACAGTGGATCT  >  NC_002947/1885095‑1885389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.