New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1885242	49 (1.090)	7 (0.160) +CACGGC	4/236	NT	10.5%	intergenic (+163/‑134)	PP_1692/rmuC	hypothetical protein/DNA recombination limiting inversions protein
	?	NC_002947	5756478 =	76 (1.680)					intergenic (+99/‑589)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

CTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGG  >  NC_002947/5756329‑5756626                                                                                                                                                      |                                                                                                                                                     cTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCgg                                                                                                                                                      <  2:594347/150‑1 (MQ=255)  tGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGt                                                                                                                                                     <  1:152150/150‑1 (MQ=255)   atctaTGAATGTGGCCGTGCGGGATGATGAGGAAGGTGATCACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTg                                                                                                                                                    <  1:98755/146‑1 (MQ=255)        tGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACAACTGAGCTCTGAATTAGCTTTTTAGATTTTTGGGGCTGCTTTGCAGCCAATCGCGACACAAGGCTGCTGCCACAGGATAACGTCTGCACCCAAGACTGATGCGGTGGagat                                                                                                                                               >  2:98755/1‑147 (MQ=255)                gCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgcg                                                                                                                                       >  1:303405/1‑150 (MQ=255)                       gggATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGtcgtcg                                                                                                                                >  2:612454/1‑150 (MQ=255)                         gatgatGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTa                                                                                                                              <  2:906729/150‑1 (MQ=255)                              tgaGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGc                                                                                                                         >  2:1159282/1‑150 (MQ=255)                               gaGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCg                                                                                                                        >  2:1080022/1‑150 (MQ=255)                                aGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                                                                                                       >  2:529457/1‑150 (MQ=255)                                 ggAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCggg                                                                                                                      <  2:820336/150‑1 (MQ=255)                                  gAAGGTGGTGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGt                                                                                                                     >  1:839450/1‑150 (MQ=255)                                   aaGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGtt                                                                                                                    >  1:534994/1‑150 (MQ=255)                                      gTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCAc                                                                                                                 >  1:1004809/1‑150 (MQ=255)                                       tgatgaCCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGc                                                                                                                         >  1:1039618/1‑141 (MQ=255)                                       tgatgaCCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGc                                                                                                                         <  2:1039618/141‑1 (MQ=255)                                                cTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAagag                                                                                                       <  1:612454/150‑1 (MQ=255)                                                 tGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAgg                                                                                                      >  2:707151/1‑150 (MQ=255)                                                     ctctGAATTAGCTTTTTAGATTGGTGGGGCTGCTTTGCAGCCCATCGCGAACCAAGGCGGCTCCCACAGGATCGCCTCTGGCCCCAAGGCTGATGCGGTGGACACACATCCCGGTCGTCGTAGGAGCGGGTTCACCCGGGAAGAGGCggg                                                                                                  >  1:216392/1‑150 (MQ=37)                                                     ctctGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCgg                                                                                                  <  2:534994/150‑1 (MQ=255)                                                     ctctGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCgg                                                                                                  <  1:955140/150‑1 (MQ=255)                                                      tctGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGgtcgt                                                                                                                                  <  1:996393/117‑1 (MQ=255)                                                      tctGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGgtcgt                                                                                                                                  >  2:996393/1‑117 (MQ=255)                                                      tctGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGt                                                                                                                     >  2:851182/1‑130 (MQ=255)                                                      tctGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGt                                                                                                                     <  1:851182/130‑1 (MQ=255)                                                        ccgcgaatacggtggtggcggcaacgctgaacggcaggtggagattggccagcaggcccggcctcttcgcgggtaaacccgctcctaccacggcGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                                                                                                       <  1:92119‑M2/32‑1 (MQ=255)                                                        ccgcgaatacggtggtggcggcaacgctgaacggcaggtggagattggccagcaggcccggcctcttcgcgggtaaacccgctcctaccacggcGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                                                                                                       >  2:92119‑M2/95‑126 (MQ=255)                                                          aaTTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGt                                                                                                                     >  2:880504/1‑126 (MQ=255)                                                          aaTTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGt                                                                                                                     <  1:880504/126‑1 (MQ=255)                                                            ttAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                                                   >  2:817712/1‑142 (MQ=255)                                                            ttAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                                                   <  1:817712/142‑1 (MQ=255)                                                                 tttttAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCa                                                                                      <  1:1159282/150‑1 (MQ=255)                                                                    ttAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAAtc                                                                                   <  1:1080022/150‑1 (MQ=255)                                                                         ttGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGa                                                                                                                                                  <  2:302783/82‑1 (MQ=255)                                                                         ttGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGa                                                                                                                                                  >  1:302783/1‑82 (MQ=255)                                                                         ttGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTa                                                                                                                              >  2:443457/1‑102 (MQ=255)                                                                         ttGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTa                                                                                                                              <  1:443457/102‑1 (MQ=255)                                                                         ttGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc                                                                              >  1:6210/1‑150 (MQ=255)                                                                              ggggCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGcc                                                                         <  1:931227/150‑1 (MQ=255)                                                                                ggCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGt                                                                       >  1:1038317/1‑150 (MQ=255)                                                                                      tttGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCg                                                                 >  2:1083228/1‑150 (MQ=255)                                                                                      tttGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTACTCCCCCAGATCCACCTGCCGGTCACCg                                                                 >  1:566839/1‑150 (MQ=25)                                                                                           aGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTtgct                                                            >  1:652792/1‑150 (MQ=255)                                                                                            gCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTtgctg                                                           >  2:221210/1‑150 (MQ=255)                                                                                             cccATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTtgctgc                                                          >  2:1094664/1‑150 (MQ=255)                                                                                                aTCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                                                                                                       <  2:825649/86‑1 (MQ=255)                                                                                                aTCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                                                                                                       >  1:825649/1‑86 (MQ=255)                                                                                                 tCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAg                                                                                                                             <  2:419919/79‑1 (MQ=255)                                                                                                 tCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAg                                                                                                                             >  1:419919/1‑79 (MQ=255)                                                                                                 tCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTgccgcc                                                      >  2:803467/1‑150 (MQ=255)                                                                                                   gcgACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCAc                                                    <  1:1066867/150‑1 (MQ=255)                                                                                                    cgACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCAcc                                                   <  2:652792/150‑1 (MQ=255)                                                                                                       cacaAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTa                                                >  1:13638/1‑150 (MQ=255)                                                                                                          aaGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc                                                                              <  1:589313/117‑1 (MQ=255)                                                                                                          aaGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc                                                                              >  2:589313/1‑117 (MQ=255)                                                                                                            ggCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGgtcgtc                                                                                                                                 <  2:1009549/64‑1 (MQ=255)                                                                                                            ggCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGgtcgtc                                                                                                                                 >  1:1009549/1‑64 (MQ=255)                                                                                                              ccGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCgg                                         <  1:1083228/150‑1 (MQ=255)                                                                                                                 ccggcctcttcgcgggtgaacccgctcctaccacggcGTGGACACACATCGCGGTCGTCGTAg                                                                                                                             <  2:94396‑M2/26‑1 (MQ=255)                                                                                                                 ccggcctcttcgcgggtgaacccgctcctaccacggcGTGGACACACATCGCGGTCGTCGTAg                                                                                                                             >  1:94396‑M2/38‑63 (MQ=255)                                                                                                                 cTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgcg                                                                                                                                       <  2:265706/53‑1 (MQ=255)                                                                                                                 cTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgcg                                                                                                                                       >  1:265706/1‑53 (MQ=255)                                                                                                                    ccACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGGGGAGCGCGCTGGCCTGTCTCCACCTGGCGTTCACCGTTGCTGCCGGCACCGTATTCGCTGGTAAAc                                   >  1:390032/1‑150 (MQ=18)                                                                                                                      acaGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTTCTGCCGCCACCGTATTCGCGGGTaatcgc                                 >  2:54787/1‑146 (MQ=255)                                                                                                                        aGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTTCCGCCACCGTATTCGCGGGTAAACCcgc                               <  1:221210/150‑1 (MQ=255)                                                                                                                        aGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCcgc                               <  2:839450/150‑1 (MQ=255)                                                                                                                          gagcgggtttacccgctcctaccacggcGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCctgctg                                                                                          <  2:8417‑M2/61‑1 (MQ=255)                                                                                                                          gATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCgg                                                                                                  >  2:462202/1‑81 (MQ=255)                                                                                                                          gATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCgg                                                                                                  <  1:462202/81‑1 (MQ=255)                                                                                                                          gATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCATCGTAGGAGCGGGTTCACCCGCGAAGAAGCCGGGCCTGCTGGACAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCcgctc                             >  2:286680/1‑148 (MQ=255)                                                                                                                             cACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTTTACCcgcgaata                          <  2:13638/150‑5 (MQ=255)                                                                                                                              aCCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTAc                         >  2:177714/1‑150 (MQ=255)                                                                                                                               ccTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCGGGGCCTGCTGGCGAATCTCCACCTGCCGTTCACCGTTGCTGCCGCGACCGTATTCACGGGTAAACCCGCGCCTAcc                        >  2:682749/1‑150 (MQ=255)                                                                                                                                ctctGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc                                                                              >  1:42177/1‑95 (MQ=255)                                                                                                                                ctctGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc                                                                              <  2:42177/95‑1 (MQ=255)                                                                                                                                ctctGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTAGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCa                       >  1:197818/1‑150 (MQ=255)                                                                                                                                 tctGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCa                                                     >  2:1066495/1‑119 (MQ=255)                                                                                                                                 tctGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCa                                                     <  1:1066495/119‑1 (MQ=255)                                                                                                                                  ctGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTAGTAGAAGCGGGATAACCAGCGAAGAGGACGGGCCTGCGTGCCAAGCGCCATCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCAcg                     >  2:439982/1‑150 (MQ=18)                                                                                                                                     cccgctcctaccacggcGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                                                                                                       <  1:21939‑M2/32‑1 (MQ=255)                                                                                                                                     cccgctcctaccacggcGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                                                                                                       >  2:21939‑M2/18‑49 (MQ=255)                                                                                                                                       cccAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCAcggcggg                >  2:341037/1‑149 (MQ=255)                                                                                                                                       cccAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGt                >  1:160597/1‑150 (MQ=255)                                                                                                                                       cccAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGt                <  1:1094664/150‑1 (MQ=255)                                                                                                                                        ccAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc                                                                              <  2:48817/87‑1 (MQ=255)                                                                                                                                        ccAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc                                                                              >  1:48817/1‑87 (MQ=255)                                                                                                                                            ggCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGca           <  2:160597/150‑1 (MQ=255)                                                                                                                                               tGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTa                          >  2:153574/1‑132 (MQ=255)                                                                                                                                               tGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTa                          <  1:153574/132‑1 (MQ=255)                                                                                                                                                     ggTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCggg  <  1:177714/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGG  >  NC_002947/5756329‑5756626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.