New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2038740 =	49 (1.090)	3 (0.070)	3/234	NT	6.2%	coding (783/1143 nt)	rffE	UDP‑N‑acetylglucosamine‑2‑epimerase
	?	NC_002947	2038777 =	45 (1.060)					coding (746/1143 nt)	rffE	UDP‑N‑acetylglucosamine‑2‑epimerase

CTGGTCACCGGCCACCGGCGCGAGAACTTTGGTGGCGGCTTCGAGCGCATCTGCCAGGCCCTGGTGCAGATTGCACGGCAATTCCCCGAGTTGGACGTGGTGTACCCGGTCCACCTCAACCCCAACGTGCGCGAGCCGGTCAACCGGCTGTTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2038895‑2038740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttggggTTGAGGTGGACCGGGTACACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCGGCGCTCGGCTGCCAGGTAGC  >  NC_002947/2038777‑2038924                                                                                                                                                                                                                                                                                                                  CTGGTCACCGGCCACCGGCGCGAGAACTTTGGTGGCGGCTTCGAGCGCATCTGCCAGGCCCTGGTGCAGATTGCACGGCAATTCCCCGAGTTGGACGTGGTGTACCCGGTCCACCTCAACCCCAACGTGCGCGAGCCGGTCAACCGGCTG                                                                                                                                                            >  1:249132/1‑150     TCACCGGCCACCGGCGCGAGAACTTTGGTGGCGGCTTCGAGCGCATCTGCCAGGCCCTGGTGCAGATTGCACGGCAATTCCCCGAGTTGGACGTGGTGTACCCGGTCCACCTCAACCCCAACGTGCGCGAGCCGGTCAACCGGCTGTTGG                                                                                                                                                        <  2:787870/150‑1                                                                                      CCGAGTTGGACGTGGTGTACCCGGTCCACCTCAACCCCAACGTGCGCGAGCCGGTCAACCGGCTGTTGGG                                                                                                                                                       >  1:813935/1‑70                                                                                      CCGAGTTGGACGTGGTGTACCCGGTCCACCTCAACCCCAACGTGCGCGAGCCGGTCAACCGGCTGTTGGG                                                                                                                                                       <  2:813935/70‑1                                                                                                                    TCAACCCCAACGTGCGCGAGCCGGTCAACCGGCTGTTGGGGTTGAGGTGGACCGGGTACACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGC                                         >  2:86973/1‑150                                                                                                                        CCCCAACGTGCGCGAGCCGGTCAACCGGCTGTTGGGGTTGAGGTGGACCGGGTACACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACC                                                                                             >  1:681889/1‑94                                                                                                                        CCCCAACGTGCGCGAGCCGGTCAACCGGCTGTTGGGGTTGAGGTGGACCGGGTACACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACC                                                                                             <  2:681889/94‑1                                                                                                                                                           GGTTGAGGTGGACCGGGTACACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCGGCGCTCGGCTGCCAGGTAGC  >  1:280796/1‑150                                                                                                                                                            GTTGAGGTGGACCGGGTACACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAA                            >  1:1043236/1‑123                                                                                                                                                            GTTGAGGTGGACCGGGTACACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAA                            <  2:1043236/123‑1                                                                                                                                                                                                                                                                                                                  CTGGTCACCGGCCACCGGCGCGAGAACTTTGGTGGCGGCTTCGAGCGCATCTGCCAGGCCCTGGTGCAGATTGCACGGCAATTCCCCGAGTTGGACGTGGTGTACCCGGTCCACCTCAACCCCAACGTGCGCGAGCCGGTCAACCGGCTGTTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2038895‑2038740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttggggTTGAGGTGGACCGGGTACACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCGGCGCTCGGCTGCCAGGTAGC  >  NC_002947/2038777‑2038924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.