New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2038740 =	49 (1.090)	3 (0.070)	3/234	NT	6.2%	coding (783/1143 nt)	rffE	UDP‑N‑acetylglucosamine‑2‑epimerase
	?	NC_002947	2038777 =	45 (1.060)					coding (746/1143 nt)	rffE	UDP‑N‑acetylglucosamine‑2‑epimerase

CTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCGGCGCTCGGCTGCCAGGTAGC  >  NC_002947/2038631‑2038924                                                                                                                                                   |                                                                                                                                                     gccaccggcgcgagaactttggtggcggcttcgagcgcatctgccaggccctggtgcagattgcacggcaattccccgagttggacgtggtgtacccggtccacctcaaCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGa                                                                                                                                                   >  2:86973‑M1/110‑150 (MQ=255)  ttCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAg                                                                                                                                                  >  2:745108/1‑150 (MQ=255)      tcctGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTCATCCAGCGGTTCGACAAGCTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTgg                                                                                                                                              >  2:1107151/1‑150 (MQ=255)      tcctGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTgg                                                                                                                                              >  1:33717/1‑150 (MQ=255)      tcctGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTgg                                                                                                                                              >  2:325374/1‑150 (MQ=255)           aaTGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCgg                                                                                                                                         <  2:779069/150‑1 (MQ=255)               ccACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTa‑c                                                                                                                                    >  1:4242/1‑150 (MQ=255)                 aCCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTa‑cac                                                                                                                                  <  1:502635/150‑1 (MQ=255)                       gTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTc                                                                                                                            <  2:977225/150‑1 (MQ=255)                       gTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTc                                                                                                                            <  2:814681/150‑1 (MQ=255)                        tCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTcc                                                                                                                           >  2:238681/1‑150 (MQ=255)                               gAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCgg                                                                                                                    <  1:752606/150‑1 (MQ=255)                                    acaTAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAAt                                                                                                               >  2:204288/1‑150 (MQ=255)                                     caTAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAAtt                                                                                                              <  2:4242/150‑1 (MQ=255)                                      aTAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCGCATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑cacc                                                                                                                                 <  2:486385/130‑1 (MQ=255)                                      aTAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCGCATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑cacc                                                                                                                                 >  1:486385/1‑130 (MQ=255)                                      aTAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTg                                                                                                             >  2:821217/1‑150 (MQ=255)                                          gCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGt                                                                                                         <  1:204288/150‑1 (MQ=255)                                                 tCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCt                                                                                                  >  1:311942/1‑150 (MQ=255)                                                       ggTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGcc                                                                                                           <  1:231182/135‑1 (MQ=255)                                                       ggTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGcc                                                                                                           >  2:231182/1‑135 (MQ=255)                                                         tAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAgg                                                                                          >  2:249132/1‑150 (MQ=255)                                                               aacgGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTgg                                                                                    <  2:487258/150‑1 (MQ=255)                                                                   gCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGa                                                                                >  1:1099222/1‑150 (MQ=255)                                                                    cAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGAt                                                                               >  2:1001036/1‑150 (MQ=255)                                                                          aTCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACAGTCTCGCTCACTTTTGTGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTc                                                                         <  1:745108/150‑1 (MQ=255)                                                                             cAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGt                                                                                                         >  1:1113115/1‑115 (MQ=255)                                                                             cAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGt                                                                                                         <  2:1113115/115‑1 (MQ=255)                                                                              aGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAg                                                                     <  1:821217/150‑1 (MQ=255)                                                                                   ttCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAgccgcc                                                                >  1:283075/1‑150 (MQ=255)                                                                                      gACAAGGTGGATGTTGCTCACATCCCCCAACAGGCGGTTGACCGTATCGCGCACGGGTGGGTTGAGGTTGGCCGGGAAGCATCAC‑CAAAGCTTTTTTTGTTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTGGAAGCCGccacc                                                             >  1:275153/1‑150 (MQ=255)                                                                                      gACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGccacc                                                             >  1:838958/1‑150 (MQ=255)                                                                                            gTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGtt                                                       >  2:247130/1‑150 (MQ=255)                                                                                               gATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACTTCCAACTCGGGGAATTGCAGTGCCATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTtctc                                                    <  2:471225/150‑1 (MQ=255)                                                                                               gATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTtctc                                                    <  1:197014/150‑1 (MQ=255)                                                                                                 tGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGGGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGTGAATTGCCGTGAAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACGAAAGTTCTcgg                                                  >  2:151615/1‑149 (MQ=255)                                                                                                 tGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGAt                                                                               <  1:229945/121‑1 (MQ=255)                                                                                                 tGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGAt                                                                               >  2:229945/1‑121 (MQ=255)                                                                                                 tGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTcgc                                                  <  1:325374/150‑1 (MQ=255)                                                                                                    tGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCCATGGGCGACGGACCGTGGCAGGTGCGCGCGAAGCCGCCACCAAAGTTCTCGCgcc                                               <  1:151615/150‑1 (MQ=255)                                                                                                         acaTCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCgccggtgg                                          >  1:60813/1‑150 (MQ=255)                                                                                                          tcaaccccaacgtgcgcgagccggtcaaccggctgttggggTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCgccggtggc                                         >  2:86973‑M2/42‑150 (MQ=255)                                                                                                            ccccccAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCgccggtggccg                                       <  1:375489/149‑1 (MQ=255)                                                                                                              ccccaacgtgcgcgagccggtcaaccggctgttggggTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCAcc                                                                                             >  1:681889‑M2/38‑94 (MQ=255)                                                                                                              ccccaacgtgcgcgagccggtcaaccggctgttggggTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCAcc                                                                                             <  2:681889‑M2/57‑1 (MQ=255)                                                                                                               CCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCgg                                                                                                                    >  1:813935‑M1/1‑70 (MQ=255)                                                                                                               CCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCgg                                                                                                                    <  2:813935‑M1/70‑1 (MQ=255)                                                                                                                CCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGa                                   <  2:787870‑M1/150‑1 (MQ=255)                                                                                                                 cAACAGCCGGTTGACCGGCTCGCGCGCGCTGGGGTTGAGGTGGACCGGGTA‑CAGCACGCAAAAATCGGTGAATTGCCGTGCAATCTGTCTCAGGGCCTGGCAGATGGACTCGAAGCCGCCACCAAAGCTCTCGCgccgctggccggtggg                                  >  2:74528/1‑148 (MQ=255)                                                                                                                    CAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAg                               >  1:249132‑M1/1‑150 (MQ=255)                                                                                                                          gTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAg                         >  1:865388/1‑150 (MQ=255)                                                                                                                             gACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCCATCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCg                      >  2:1124490/1‑150 (MQ=255)                                                                                                                              aCCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCgg                     <  2:311942/150‑1 (MQ=255)                                                                                                                                     cgcgCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCGGCGCTCgg              <  2:838958/150‑1 (MQ=255)                                                                                                                                                 ggTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCGGCGCTCGGCTGCCAGGTAGc  >  1:280796‑M2/3‑150 (MQ=255)                                                                                                                                                  gTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCaa                            <  2:1043236‑M2/122‑1 (MQ=255)                                                                                                                                                  gTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCaa                            >  1:1043236‑M2/2‑123 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CTTCCTCCTGAATGCCACCCGAGTCGGTCAGAATCACATAGGCCCGGGTCATGAGGTAAACGAACGGCAGGTAATCCAGCGGTTCGACAAGGTGGATGTTGCTCACATCCCCCAACAGCCGGTTGACCGGCTCGCGCACGTTGGGGTTGAGGTGGACCGGGTA‑CACCACGTCCAACTCGGGGAATTGCCGTGCAATCTGCACCAGGGCCTGGCAGATGCGCTCGAAGCCGCCACCAAAGTTCTCGCGCCGGTGGCCGGTGACCAGCAACAGCCGGCGCTCGGCTGCCAGGTAGC  >  NC_002947/2038631‑2038924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.