New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2063203 =	40 (0.890)	6 (0.170)	5/198	NT	18.5%	intergenic (+17/‑190)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	2063297 =	21 (0.580)					intergenic (+111/‑96)	PP_1838/PP_1839	membrane protein/hypothetical protein

ACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2063372‑2063203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAT  >  NC_002947/2063297‑2063444                                                                                                                                                                                                                                                                                                                                ACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCG                                                                                                                                                                          <  1:707392/150‑1         CAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCC                                                                                                                                                                  >  2:1072845/1‑150                  GATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGG                                                                                                                                                         >  1:1013678/1‑150                   ATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGG                                                                                                                                                        <  2:1013678/150‑1                                                               GGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTGCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAAT                                                                                                                                                           <  2:876601/103‑1                                                               GGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAAT                                                                                                                                                           >  1:876601/1‑103                                                                                               CCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGGGGTCGCGAGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCAGACACCGGGTGTTC                                                                            >  2:364536/1‑150                                                                                                CCGCTCGCACAGGACCTGCACAAGGTCCGAACACTTTTCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCG                                                                           >  1:698423/1‑150                                                                                                    TCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCG                                                                                                                                      >  1:41332/1‑87                                                                                                    TCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCG                                                                                                                                      <  2:41332/87‑1                                                                                                                    CAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCG                                                                                                                                      <  1:43344/71‑1                                                                                                                    CAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCG                                                                                                                                      >  2:43344/1‑71                                                                                                                                                        GCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACGGAACAGTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGGCCGTTCAATGAAAGAGTGGGGAGTCATTTTTGCAGACacgaa                   >  2:908141/1‑145                                                                                                                                                         CAAGCCCGCGAATGGGCCCCGCACCATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAG                  <  1:908141/150‑1                                                                                                                                                           AGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGG                >  2:789635/1‑150                                                                                                                                                               CGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAA            <  1:789635/150‑1                                                                                                                                                               CGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTT                                                                         >  2:437386/1‑89                                                                                                                                                               CGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTT                                                                         <  1:437386/89‑1                                                                                                                                                                 CGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACC          <  1:157311/150‑1                                                                                                                                                                         CCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAT  >  1:831051/1‑150                                                                                                                                                                                                                                                                                                                                ACGAACACCAGGTGTGTGATGCCTGAATAACTGACCTTGGGGCGGGGATAATGTTCAGTCCGGGAAAATTGTGCGGGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2063372‑2063203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAT  >  NC_002947/2063297‑2063444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.