New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2063203 =	40 (0.890)	6 (0.170)	5/198	NT	18.5%	intergenic (+17/‑190)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	2063297 =	21 (0.580)					intergenic (+111/‑96)	PP_1838/PP_1839	membrane protein/hypothetical protein

GATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAT  >  NC_002947/2063148‑2063444                                                                                                                                                      |                                                                                                                                                    gATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGccc                                                                                                                                                     >  2:692401/1‑150 (MQ=255)                      cACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGa                                                                                                                                >  1:526673/1‑150 (MQ=255)                         ggCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACa                                                                                                                             >  1:1072845/1‑150 (MQ=255)                                cGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGGGGGCTTGCCCGCTTCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGACCGGGGCTAGCGGGTAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATccc                                                                                                                      <  2:771756/150‑1 (MQ=255)                                cGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATccc                                                                                                                      >  2:157311/1‑150 (MQ=255)                                 gAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTACCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATcccc                                                                                                                     >  1:1149571/1‑150 (MQ=255)                                  aaGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCg                                                                                                                    <  1:692401/150‑1 (MQ=255)                                         ccGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAg                                                                                                             <  1:1187104/150‑1 (MQ=255)                                              gCCGGGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATGGCAGAGGGTGCGGACCTTGTGCAGGTCCTGTCCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAg                                                                                                        <  1:684631/150‑1 (MQ=38)                                                          CCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCAt                                                                                            <  2:1013678‑M1/150‑1 (MQ=255)                                                           CCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATc                                                                                           >  1:1013678‑M1/1‑150 (MQ=255)                                                             ATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTcc                                                                                                                                        >  1:876601‑M1/1‑103 (MQ=255)                                                             ATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGCACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTcc                                                                                                                                        <  2:876601‑M1/103‑1 (MQ=255)                                                                    GGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTg                                                                                  >  2:1072845‑M1/1‑150 (MQ=255)                                                                          cccgctcgcacaggacctgcacaaggtccgaaccctgtgcaatgcctggggtcgcgagcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCAGACACCGGGTGTTc                                                                            >  2:364536‑M2/77‑150 (MQ=255)                                                                           ccgctcgcacaggacctgcacaaggtccgaacacttttcaatgcctgtgggagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg                                                                           >  1:698423‑M2/76‑150 (MQ=255)                                                                            CGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGt                                                                          <  1:707392‑M1/150‑1 (MQ=255)                                                                               tcgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCg                                                                                                                                      >  1:41332‑M2/72‑87 (MQ=255)                                                                               tcgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCg                                                                                                                                      <  2:41332‑M2/16‑1 (MQ=255)                                                                                 ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCAt                                                                                            >  2:1016312/1‑127 (MQ=255)                                                                                 ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCAt                                                                                            <  1:1016312/127‑1 (MQ=255)                                                                                    caGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgag                                                                  >  2:847671/1‑150 (MQ=255)                                                                                              acaGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATcaca                                                                                        >  2:1046166/1‑118 (MQ=255)                                                                                              acaGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATcaca                                                                                        <  1:1046166/118‑1 (MQ=255)                                                                                              acaGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGtt                                                        >  2:104965/1‑150 (MQ=255)                                                                                               caaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCg                                                                                                                                      <  1:43344‑M2/16‑1 (MQ=255)                                                                                               caaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCg                                                                                                                                      >  2:43344‑M2/56‑71 (MQ=255)                                                                                                 ctgTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCACGCAGGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCaa                                                     <  1:918683/148‑1 (MQ=255)                                                                                                      cGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGaaa                                                <  2:1149571/150‑1 (MQ=255)                                                                                                       ggACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATGACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAag                                               >  1:755537/1‑150 (MQ=255)                                                                                                       ggACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGGGAgg                                                               >  2:1000187/1‑134 (MQ=255)                                                                                                       ggACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGGGAgg                                                               <  1:1000187/134‑1 (MQ=255)                                                                                                        gACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAaga                                              >  2:391980/1‑150 (MQ=255)                                                                                                             tgtgCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTggg                                         <  1:847671/150‑1 (MQ=255)                                                                                                                                   gcaagcccgcgaatgggccCCGCACAATTTTCCCGGACGGAACAGTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGGCCGTTCAATGAAAGAGTGGGGAGTCATTTTTgcagacacgaa                   >  2:908141‑M2/20‑145 (MQ=255)                                                                                                                                    caagcccgcgaatgggccCCGCACCATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAg                  <  1:908141‑M2/132‑1 (MQ=255)                                                                                                                                      agcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAggg                >  2:789635‑M2/17‑150 (MQ=255)                                                                                                                                          cgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt                                                                         >  2:437386‑M2/13‑89 (MQ=255)                                                                                                                                          cgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt                                                                         <  1:437386‑M2/77‑1 (MQ=255)                                                                                                                                          cgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGaa            <  1:789635‑M2/138‑1 (MQ=255)                                                                                                                                            cgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAAcc          <  1:157311‑M2/140‑1 (MQ=255)                                                                                                                                                    ccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAt  >  1:831051‑M2/3‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAT  >  NC_002947/2063148‑2063444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.