New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2076413 =	39 (0.860)	4 (0.100)	4/228	NT	10.0%	intergenic (+7/+39)	PP_5479/PP_1852	LysR family transcriptional regulator/enoyl‑ACP reductase
	?	NC_002947	2076442 =	36 (0.870)					intergenic (+36/+10)	PP_5479/PP_1852	LysR family transcriptional regulator/enoyl‑ACP reductase

CATTGGGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2076569‑2076413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAAT  >  NC_002947/2076442‑2076583                                                                                                                                                                                                                                                                                                             CATTGGGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGG                                                                                                                                                       <  2:99742/150‑1      GGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAG                                                                                                                                                  >  1:1123032/1‑150      GGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAG                                                                                                                                                  >  2:204532/1‑150        CGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAGAACCGGCACAGGC                                                                                                                                                >  2:936261/1‑150                                                    GGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCC                                                                                                                                                         <  1:244692/97‑1                                                    GGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCC                                                                                                                                                         >  2:244692/1‑97                                                                                                                     GATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAG                                                                 <  1:934514/120‑1                                                                                                                     GATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAG                                                                 >  2:934514/1‑120                                                                                                                       TTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATAT                                                                                       <  1:731477/96‑1                                                                                                                       TTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATAT                                                                                       >  2:731477/1‑96                                                                                                                                                    CGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGA    <  1:624624/150‑1                                                                                                                                                      GCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAAT  >  2:89847/1‑150                                                                                                                                                            GCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGC                                                           <  1:397561/87‑1                                                                                                                                                            GCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGC                                                           >  2:397561/1‑87                                                                                                                                                                                                                                                                                                             CATTGGGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2076569‑2076413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAAT  >  NC_002947/2076442‑2076583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.