New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2076413 =	39 (0.860)	4 (0.100)	4/228	NT	10.0%	intergenic (+7/+39)	PP_5479/PP_1852	LysR family transcriptional regulator/enoyl‑ACP reductase
	?	NC_002947	2076442 =	36 (0.870)					intergenic (+36/+10)	PP_5479/PP_1852	LysR family transcriptional regulator/enoyl‑ACP reductase

CGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAAT  >  NC_002947/2076294‑2076583                                                                                                                                                     |                                                                                                                                              cgcgGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCaa                                                                                                                                              <  1:45133/150‑1 (MQ=255)                    ggTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCAACACCGGCTGCCCGGGCTTTTCTTGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCaa                                                                                                                           >  2:424894/1‑150 (MQ=255)                            aCTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACccacca                                                                                                                   >  1:423912/1‑150 (MQ=255)                             cTTGTATGCGGTGTGGTCGTCCAGCCCAACACCGGCTGCCCGGGCTTTTCTTGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCAt                                                                                                                  <  1:424894/150‑1 (MQ=255)                                  aTGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCGGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACa                                                                                                             <  2:291769/150‑1 (MQ=255)                                   tGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCaa                                                                                                                                              >  2:1027621/1‑116 (MQ=255)                                   tGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCaa                                                                                                                                              <  1:1027621/116‑1 (MQ=255)                                         ctggcagggcctgaagccgggtatatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATc                                                                                                                                    <  1:934514‑M1/41‑1 (MQ=255)                                         ctggcagggcctgaagccgggtatatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATc                                                                                                                                    >  2:934514‑M1/80‑120 (MQ=255)                                          tgGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCt                                                                                                     <  2:528370/150‑1 (MQ=255)                                            gtcgtcCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTgg                                                                                                   >  1:888229/1‑150 (MQ=255)                                                tcCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGcccc                                                                                               >  1:786616/1‑150 (MQ=255)                                                      cccACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGat                                                                                         >  2:1014031/1‑150 (MQ=255)                                                       ccACACCGGCTGCCCGGGCTTTTCTGCACCTGCTGGAGCAGTGCCTGGGGGCAAAGTAAGACTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGata                                                                                        >  1:521721/1‑150 (MQ=255)                                                               gCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGc                                                                                >  2:624624/1‑150 (MQ=255)                                                               atatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCaa                                                                                                                                      >  2:731477‑M1/58‑96 (MQ=255)                                                               atatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCaa                                                                                                                                      <  1:731477‑M1/39‑1 (MQ=255)                                                                   cccGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCATGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCa                                                                            <  2:466293/150‑1 (MQ=255)                                                                   cccGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCa                                                                            <  2:786616/150‑1 (MQ=255)                                                                    ccGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGTGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAg                                                                           <  1:170808/150‑1 (MQ=255)                                                                    ccGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAg                                                                           >  1:23433/1‑150 (MQ=255)                                                                     cGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCa                                                                                                         >  2:224891/1‑119 (MQ=255)                                                                     cGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCa                                                                                                         <  1:224891/119‑1 (MQ=255)                                                                           tttCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGc                                                                    >  1:1066669/1‑150 (MQ=255)                                                                                ggACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGt                                                               >  2:1123032/1‑150 (MQ=255)                                                                                 gACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTa                                                              >  1:298231/1‑150 (MQ=255)                                                                                    gTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGa                                                                                          >  1:24681/1‑119 (MQ=255)                                                                                    gTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGa                                                                                          <  2:24681/119‑1 (MQ=255)                                                                                      gATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCa                                                         <  1:107400/150‑1 (MQ=255)                                                                                       aTGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCAc                                                        <  2:1066669/150‑1 (MQ=255)                                                                                       aTGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCAc                                                        <  2:23433/150‑1 (MQ=255)                                                                                         ggAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCa                                                         >  1:6168/1‑147 (MQ=255)                                                                                         ggAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCa                                                         <  2:6168/147‑1 (MQ=255)                                                                                              aGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAAATCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTg                                                 <  1:1124664/150‑1 (MQ=255)                                                                                                   cTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAGGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAAt                                            >  1:936261/1‑150 (MQ=255)                                                                                                    tGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAg                                                    >  1:529548/1‑141 (MQ=255)                                                                                                    tGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAg                                                    <  2:529548/141‑1 (MQ=255)                                                                                                         gCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATctcctc                                      <  2:423912/150‑1 (MQ=255)                                                                                                            gattgaacgcttgcctgtgccgcgaaaaggccggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAg                                                                 <  1:934514‑M2/79‑1 (MQ=255)                                                                                                            gattgaacgcttgcctgtgccgcgaaaaggccggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAg                                                                 >  2:934514‑M2/42‑120 (MQ=255)                                                                                                              ttgaacgcttgcctgtgccgcgaaaaggccggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGatat                                                                                       <  1:731477‑M2/57‑1 (MQ=255)                                                                                                              ttgaacgcttgcctgtgccgcgaaaaggccggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGatat                                                                                       >  2:731477‑M2/40‑96 (MQ=255)                                                                                                               tAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCa                                              >  2:50764/1‑136 (MQ=255)                                                                                                               tAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCa                                              <  1:50764/136‑1 (MQ=255)                                                                                                                   gCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCa                            >  1:639008/1‑150 (MQ=255)                                                                                                                    cTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCat                           >  1:352536/1‑150 (MQ=255)                                                                                                                        GCCTGTGCCGGTTCTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCg                       >  2:936261‑M1/1‑150 (MQ=255)                                                                                                                          CTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGcc                     >  2:204532‑M1/1‑150 (MQ=255)                                                                                                                          CTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGcc                     >  1:1123032‑M1/1‑150 (MQ=255)                                                                                                                               CCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATg                <  2:99742‑M1/150‑1 (MQ=255)                                                                                                                                 GGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGcc                                                                   <  1:244692‑M1/97‑1 (MQ=255)                                                                                                                                 GGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGcc                                                                   >  2:244692‑M1/1‑97 (MQ=255)                                                                                                                                  gCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGcc             <  2:521721/150‑1 (MQ=255)                                                                                                                                           cggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGa    <  1:624624‑M2/140‑1 (MQ=255)                                                                                                                                             gcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAAt  >  2:89847‑M2/9‑150 (MQ=255)                                                                                                                                                   gcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGc                                                           <  1:397561‑M2/85‑1 (MQ=255)                                                                                                                                                   gcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGc                                                           >  2:397561‑M2/3‑87 (MQ=255)                                                                                                                                                     |                                                                                                                                              CGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAAT  >  NC_002947/2076294‑2076583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.