| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2076413 = | 39 (0.860) | 4 (0.100) | 4/228 | NT | 10.0% | intergenic (+7/+39) | PP_5479/PP_1852 | LysR family transcriptional regulator/enoyl‑ACP reductase |
| ? | NC_002947 | 2076442 = | 36 (0.870) | intergenic (+36/+10) | PP_5479/PP_1852 | LysR family transcriptional regulator/enoyl‑ACP reductase | |||||
CTCAAGGCATCGAAGGTGTAGCCGTGGCGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCG > NC_002947/2076267‑2076562 | cTCAAGGCATCGAAGGTGTAGCCGTGGCGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGGTAAGCCt > 1:204532/1‑150 (MQ=255) tCAAGGCATCGACTGTGTAGCCGTGGCGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCtg > 1:291769/1‑150 (MQ=255) attccgctgatggccattgggcgatatggcgagccggaggagattgccagcttcgtggcttacctggcagggcctgaagccgggtatatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGc > 2:89847‑M1/143‑150 (MQ=255) tccgctgatggccattgggcgatatggcgagccggaggagattgccagcttcgtggcttacctggcagggcctgaagccgggtatatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCg < 1:624624‑M1/10‑1 (MQ=255) gCATCGAAGGTGTAGCCGTGGCGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCg < 1:383357/150‑1 (MQ=255) gCCGTGGCGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGca > 1:528370/1‑150 (MQ=255) tGGCGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTGTGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAgg < 2:348057/150‑1 (MQ=255) cgcgGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCaa < 1:45133/150‑1 (MQ=255) ggTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCAACACCGGCTGCCCGGGCTTTTCTTGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCaa > 2:424894/1‑150 (MQ=255) aCTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACccacca > 1:423912/1‑150 (MQ=255) cTTGTATGCGGTGTGGTCGTCCAGCCCAACACCGGCTGCCCGGGCTTTTCTTGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCAt < 1:424894/150‑1 (MQ=255) aTGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCGGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACa < 2:291769/150‑1 (MQ=255) tGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCaa < 1:1027621/116‑1 (MQ=255) tGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCaa > 2:1027621/1‑116 (MQ=255) gcttacctggcagggcctgaagccgggtatatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGc < 1:397561‑M1/2‑1 (MQ=255) gcttacctggcagggcctgaagccgggtatatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGc > 2:397561‑M1/86‑87 (MQ=255) ctggcagggcctgaagccgggtatatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATc > 2:934514‑M1/80‑120 (MQ=255) ctggcagggcctgaagccgggtatatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATc < 1:934514‑M1/41‑1 (MQ=255) tgGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCt < 2:528370/150‑1 (MQ=255) gtcgtcCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTgg > 1:888229/1‑150 (MQ=255) tcCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGcccc > 1:786616/1‑150 (MQ=255) cccACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGat > 2:1014031/1‑150 (MQ=255) ccACACCGGCTGCCCGGGCTTTTCTGCACCTGCTGGAGCAGTGCCTGGGGGCAAAGTAAGACTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGata > 1:521721/1‑150 (MQ=255) gCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGc > 2:624624/1‑150 (MQ=255) atatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCaa < 1:731477‑M1/39‑1 (MQ=255) atatcaccggggccagcctgactgtagatggtgggtttgcagcctgattgaacgcttGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCaa > 2:731477‑M1/58‑96 (MQ=255) cccGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCATGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCa < 2:466293/150‑1 (MQ=255) cccGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCa < 2:786616/150‑1 (MQ=255) ccGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGTGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAg < 1:170808/150‑1 (MQ=255) ccGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAg > 1:23433/1‑150 (MQ=255) cGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCa < 1:224891/119‑1 (MQ=255) cGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCa > 2:224891/1‑119 (MQ=255) tttCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGc > 1:1066669/1‑150 (MQ=255) ggACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGt > 2:1123032/1‑150 (MQ=255) gACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTa > 1:298231/1‑150 (MQ=255) gTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGa < 2:24681/119‑1 (MQ=255) gTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGa > 1:24681/1‑119 (MQ=255) gATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCa < 1:107400/150‑1 (MQ=255) aTGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCAc < 2:23433/150‑1 (MQ=255) aTGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCAc < 2:1066669/150‑1 (MQ=255) ggAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCa > 1:6168/1‑147 (MQ=255) ggAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCa < 2:6168/147‑1 (MQ=255) aGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAAATCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTg < 1:1124664/150‑1 (MQ=255) cTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAGGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAAt > 1:936261/1‑150 (MQ=255) tGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAg > 1:529548/1‑141 (MQ=255) tGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAg < 2:529548/141‑1 (MQ=255) gCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATctcctc < 2:423912/150‑1 (MQ=255) tAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCa > 2:50764/1‑136 (MQ=255) tAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCa < 1:50764/136‑1 (MQ=255) gCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCa > 1:639008/1‑150 (MQ=255) cTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCat > 1:352536/1‑150 (MQ=255) GCCTGTGCCGGTTCTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCg > 2:936261‑M1/1‑150 (MQ=255) | CTCAAGGCATCGAAGGTGTAGCCGTGGCGCGGTTGGTGGATGCGCCGGTGCGGCACTTGTATGCGGTGTGGTCGTCCAGCCCCACACCGGCTGCCCGGGCTTTTCTGGACGTGATGGAGCAGTGCCTGGGGGCAAAGTAAGGCTAAGCCTGTGCCGGCCTTTTCGCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCG > NC_002947/2076267‑2076562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |