New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2546995 =	35 (0.780)	4 (0.090)	4/238	NT	10.3%	coding (171/282 nt)	PP_5504	hypothetical protein
	?	NC_002947	2547022 =	36 (0.830)					coding (144/282 nt)	PP_5504	hypothetical protein

TCCTGGCCATCTTGGCCATTGCTGGATGTGCCGCCACAGCCAAGACCGAGGTCAAAAGGGGCAAGAAGGGCCTGCATATCAATTGCTCCGGTCTTTCTTCCTCATGGGACAATTGCTACAGCAAGGCCGCAAGCGCCTGCAGCACGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2547146‑2546995 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGAAAAATTCGTTTCATT  >  NC_002947/2547022‑2547166                                                                                                                                                                                                                                                                                                           TCCTGGCCATCTTGGCCATTGCTGGATGTGCCGCCACAGCCAAGACCGAGGTCAAAAGGGGCAAGAAGGGCCTGCATATCAATTGCTCCGGTCTTTCTTCCTCATGGGACAATTGCTACAGCAAGGCCGCAAGCGCCTGCCTCTCGCGCG                                                                                                                                                     >  1:356709/1‑150                                                                                                            GACAATTGCTACAGCAAGGCCGCAAGCGCCTGCAGCACGCGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGC                                                                                                          >  1:411241/1‑86                                                                                                            GACAATTGCTACAGCAAGGCCGCAAGCGCCTGCAGCACGCGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGC                                                                                                          <  2:411241/86‑1                                                                                                                       CAGCAAGGCCGCAAGCGCCTGCAGCACGCGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAAT                                       <  1:256490/142‑1                                                                                                                       CAGCAAGGCCGCAAGCGCCTGCAGCACGCGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAAT                                       >  2:256490/1‑142                                                                                                                                                    GCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGAAAAATTCGTTTCATT  <  2:214988/150‑1                                                                                                                                                                                                                                                                                                           TCCTGGCCATCTTGGCCATTGCTGGATGTGCCGCCACAGCCAAGACCGAGGTCAAAAGGGGCAAGAAGGGCCTGCATATCAATTGCTCCGGTCTTTCTTCCTCATGGGACAATTGCTACAGCAAGGCCGCAAGCGCCTGCAGCACGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2547146‑2546995 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGAAAAATTCGTTTCATT  >  NC_002947/2547022‑2547166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.