New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2546995 =	35 (0.780)	4 (0.090)	4/238	NT	10.3%	coding (171/282 nt)	PP_5504	hypothetical protein
	?	NC_002947	2547022 =	36 (0.830)					coding (144/282 nt)	PP_5504	hypothetical protein

CCCTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGAAAAATTCGTTTCATT  >  NC_002947/2546875‑2547166                                                                                                                                                    |                                                                                                                                                 cccTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCtt                                                                                                                                                >  1:819188/1‑150 (MQ=255) cccTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCtt                                                                                                                                                <  2:834535/150‑1 (MQ=255)  ccTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTg                                                                                                                                               >  2:25336/1‑150 (MQ=255)       tctcTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTa                                                                                                                                          <  1:25336/150‑1 (MQ=255)        ctctATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAg                                                                                                                                         <  1:527777/150‑1 (MQ=255)         tctATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGc                                                                                                                                        >  1:532729/1‑150 (MQ=255)          ctATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCa                                                                                                                                       >  2:609901/1‑150 (MQ=255)             attgctggatgtgccgccacagccaagaccgaggtcaaaaggggcaagaagggcctgcatatcaattgctccggtctttcttcctcatgggacaattgctacagcaagGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTg                                                                                                                                            >  2:256490‑M1/109‑142 (MQ=255)             attgctggatgtgccgccacagccaagaccgaggtcaaaaggggcaagaagggcctgcatatcaattgctccggtctttcttcctcatgggacaattgctacagcaagGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTg                                                                                                                                            <  1:256490‑M1/34‑1 (MQ=255)               tACAGATGTTGATCATGCCCGGGGTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACTGGCCTCTTCAGCGCTATCGCCCGAGCGCGCAATGATCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGCCCTTGCTGTAGCAATTGt                                                                                                                                  <  1:236414/150‑1 (MQ=255)                  aGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTccc                                                                                                                               <  1:101762/150‑1 (MQ=255)                        tgatCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAgg                                                                                                                         <  1:485084/150‑1 (MQ=255)                          atCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGgaa                                                                                                                       >  2:356709/1‑150 (MQ=255)                                  ccGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGAcc                                                                                                               <  2:819188/150‑1 (MQ=255)                                    ggCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCgg                                                                                                             <  2:532729/150‑1 (MQ=255)                                     gCTGGTGTAGCCCGCCGGGTTGATGACGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGa                                                                                                            <  2:330374/150‑1 (MQ=255)                                                     gggTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATTGCCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAgg                                                                                            <  2:72315/150‑1 (MQ=255)                                                             gCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCcttctt                                                                                    >  1:1097302/1‑150 (MQ=255)                                                                 aaCAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGACTGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGccc                                                                                <  1:253638/150‑1 (MQ=255)                                                                     aaTAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATAGATATGCAGGCCCTTCTTGCCCCttt                                                                            >  2:20811/1‑150 (MQ=255)                                                                            aCCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAAtt                                                                                                      <  1:1164746/117‑1 (MQ=255)                                                                            aCCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAAtt                                                                                                      >  2:1164746/1‑117 (MQ=255)                                                                             ccGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCC‑TTTGACCTCgg                                                                   >  2:1106594/1‑150 (MQ=255)                                                                                gctccggtctttcttcctcatgggacaattgctacagcaagGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTc                                                                                                                                 >  1:411241‑M1/42‑86 (MQ=255)                                                                                gctccggtctttcttcctcatgggacaattgctacagcaagGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTc                                                                                                                                 <  2:411241‑M1/45‑1 (MQ=255)                                                                                 ccTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCt                                                                >  2:527205/1‑150 (MQ=255)                                                                                        aTCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCgg                                                                                                             >  1:163478/1‑98 (MQ=255)                                                                                        aTCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCgg                                                                                                             <  2:163478/98‑1 (MQ=255)                                                                                        aTCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCtgt                                                         >  1:1112604/1‑150 (MQ=255)                                                                                         tCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCtgtg                                                        <  1:609901/150‑1 (MQ=255)                                                                                           gCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTgg                                                             >  2:313582/1‑143 (MQ=255)                                                                                           gCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTgg                                                             <  1:313582/143‑1 (MQ=255)                                                                                                      aGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAg                                           <  2:1097302/150‑1 (MQ=255)                                                                                                       gacaattgctacagcaaggccgcaagcgcctgcagcacgcgcggcCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGc                                                                                                          <  2:411241‑M2/41‑1 (MQ=255)                                                                                                       gacaattgctacagcaaggccgcaagcgcctgcagcacgcgcggcCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGc                                                                                                          >  1:411241‑M2/46‑86 (MQ=255)                                                                                                           gcAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATg                                      <  1:527205/150‑1 (MQ=255)                                                                                                           gcAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCC‑TTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATgg                                     <  1:1106594/150‑1 (MQ=255)                                                                                                             aaTGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGc                                    >  1:83971/1‑150 (MQ=255)                                                                                                                  cagcaaggccgcaagcgcctgcagcacgcgcggcCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAAt                                       >  2:256490‑M2/35‑142 (MQ=255)                                                                                                                  cagcaaggccgcaagcgcctgcagcacgcgcggcCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAAt                                       <  1:256490‑M2/108‑1 (MQ=255)                                                                                                                        aGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCa                         <  2:1112604/150‑1 (MQ=255)                                                                                                                          ccGCCCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCCATTGTCCCCTGCGGAAGAAAGACACGAGCAAATGATATGCAGGCCCTTCTAGCCCCATTTGACCTCGGCCTTCGCTGTAGCAGCACATCCATCAATGGCCACAATGGCTAgg                       >  2:9999/1‑150 (MQ=255)                                                                                                                           CGCGCGAGAGGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGa                      >  1:356709‑M1/1‑150 (MQ=255)                                                                                                                                 tgctgcAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGaa                >  1:214988/1‑150 (MQ=255)                                                                                                                                    tgcAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGat                                                                                                   <  2:1123108/64‑1 (MQ=255)                                                                                                                                    tgcAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGat                                                                                                   >  1:1123108/1‑64 (MQ=255)                                                                                                                                      cAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATAGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGAAAAAtt           <  1:20811/150‑1 (MQ=255)                                                                                                                                       aGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGAAAAATTc          >  2:287454/1‑150 (MQ=255)                                                                                                                                               gcggcCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGAAAAATTCGTTTCAtt  <  2:214988‑M2/145‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CCCTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCAGGATGAGAAAAATTCGTTTCATT  >  NC_002947/2546875‑2547166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.