New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2546995 =	35 (0.780)	4 (0.090)	4/238	NT	10.3%	coding (171/282 nt)	PP_5504	hypothetical protein
	?	NC_002947	2547022 =	36 (0.830)					coding (144/282 nt)	PP_5504	hypothetical protein

GCAGCGGAAAAAGGGCAGTTTGCGAACTGCCCTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCA  >  NC_002947/2546846‑2547143                                                                                                                                                      |                                                                                                                                                     gCAGCGGAAAAAGGGCAGTTTGCGAACTGCCGTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCTCGCCAGGGTGATGCCTAACAAATATTTACCGTCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAg                                                                                                                                                      >  2:739783/1‑150 (MQ=255)     aatgaaacgaatttttctcatcctggccatcttggccattgctggatgtgccgccacagccaagaccgaggtcaaaaggggcaagaagggcctgcatatcaattgctccggtctttcttcctcatgggacaattgctacagcaagGCcgc                                                                                                                                                  <  2:214988‑M1/5‑1 (MQ=255)              ggCAGCTTCCGAACTGCCCTTTTCACTATTTACAGATGATGATTATGCTCCGGCTGGTGTAGCCCGCCGGCTTGCTGCAGAACAAATCGTTACCGGCCTCTTCCGCGCTACCGCCCGATGGCGCCCTCACCCGGCAGCCGAGCGtgctac                                                                                                                                         >  2:19409/1‑148 (MQ=255)                cAGTTTGCGAACTGCCCTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAg                                                                                                                                       <  2:281519/150‑1 (MQ=255)                          aCTGCCCTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCga                                                                                                                             <  1:287722/150‑2 (MQ=255)                              cccTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCtt                                                                                                                         <  2:834535/150‑1 (MQ=255)                              cccTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCtt                                                                                                                         >  1:819188/1‑150 (MQ=255)                               ccTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTg                                                                                                                        >  2:25336/1‑150 (MQ=255)                                    tctcTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTa                                                                                                                   <  1:25336/150‑1 (MQ=255)                                     ctctATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAg                                                                                                                  <  1:527777/150‑1 (MQ=255)                                      tctATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGc                                                                                                                 >  1:532729/1‑150 (MQ=255)                                       ctATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCa                                                                                                                >  2:609901/1‑150 (MQ=255)                                          attgctggatgtgccgccacagccaagaccgaggtcaaaaggggcaagaagggcctgcatatcaattgctccggtctttcttcctcatgggacaattgctacagcaagGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTg                                                                                                                     <  1:256490‑M1/34‑1 (MQ=255)                                          attgctggatgtgccgccacagccaagaccgaggtcaaaaggggcaagaagggcctgcatatcaattgctccggtctttcttcctcatgggacaattgctacagcaagGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTg                                                                                                                     >  2:256490‑M1/109‑142 (MQ=255)                                            tACAGATGTTGATCATGCCCGGGGTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACTGGCCTCTTCAGCGCTATCGCCCGAGCGCGCAATGATCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGCCCTTGCTGTAGCAATTGt                                                                                                           <  1:236414/150‑1 (MQ=255)                                               aGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTccc                                                                                                        <  1:101762/150‑1 (MQ=255)                                                     tgatCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAgg                                                                                                  <  1:485084/150‑1 (MQ=255)                                                       atCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGgaa                                                                                                >  2:356709/1‑150 (MQ=255)                                                               ccGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGAcc                                                                                        <  2:819188/150‑1 (MQ=255)                                                                 ggCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCgg                                                                                      <  2:532729/150‑1 (MQ=255)                                                                  gCTGGTGTAGCCCGCCGGGTTGATGACGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGa                                                                                     <  2:330374/150‑1 (MQ=255)                                                                                  gggTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATTGCCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAgg                                                                     <  2:72315/150‑1 (MQ=255)                                                                                          gCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCcttctt                                                             >  1:1097302/1‑150 (MQ=255)                                                                                              aaCAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGACTGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGccc                                                         <  1:253638/150‑1 (MQ=255)                                                                                                  aaTAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATAGATATGCAGGCCCTTCTTGCCCCttt                                                     >  2:20811/1‑150 (MQ=255)                                                                                                         aCCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAAtt                                                                               <  1:1164746/117‑1 (MQ=255)                                                                                                         aCCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAAtt                                                                               >  2:1164746/1‑117 (MQ=255)                                                                                                          ccGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCC‑TTTGACCTCgg                                            >  2:1106594/1‑150 (MQ=255)                                                                                                             gctccggtctttcttcctcatgggacaattgctacagcaagGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTc                                                                                                          >  1:411241‑M1/42‑86 (MQ=255)                                                                                                             gctccggtctttcttcctcatgggacaattgctacagcaagGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTc                                                                                                          <  2:411241‑M1/45‑1 (MQ=255)                                                                                                              ccTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCt                                         >  2:527205/1‑150 (MQ=255)                                                                                                                     aTCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCgg                                                                                      <  2:163478/98‑1 (MQ=255)                                                                                                                     aTCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCgg                                                                                      >  1:163478/1‑98 (MQ=255)                                                                                                                     aTCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCtgt                                  >  1:1112604/1‑150 (MQ=255)                                                                                                                      tCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCtgtg                                 <  1:609901/150‑1 (MQ=255)                                                                                                                        gCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTgg                                      >  2:313582/1‑143 (MQ=255)                                                                                                                        gCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTgg                                      <  1:313582/143‑1 (MQ=255)                                                                                                                                   aGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAg                    <  2:1097302/150‑1 (MQ=255)                                                                                                                                        gcAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATg               <  1:527205/150‑1 (MQ=255)                                                                                                                                        gcAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCC‑TTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATgg              <  1:1106594/150‑1 (MQ=255)                                                                                                                                          aaTGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGc             >  1:83971/1‑150 (MQ=255)                                                                                                                                                     aGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCa  <  2:1112604/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GCAGCGGAAAAAGGGCAGTTTGCGAACTGCCCTTTTCTCTATTTACAGATGATGATCATGCTCCGGCTGGTGTAGCCCGCCGGGTTGATGCCGAACAAATAGTCACCGGCCTCTTCATCGCTATCGCCCGAGCGCGCAATGACCCGGTAGCCGCGCGTGCTGCAGGCGCTTGCGGCCTTGCTGTAGCAATTGTCCCATGAGGAAGAAAGACCGGAGCAATTGATATGCAGGCCCTTCTTGCCCCTTTTGACCTCGGTCTTGGCTGTGGCGGCACATCCAGCAATGGCCAAGATGGCCA  >  NC_002947/2546846‑2547143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.