New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2748518 =	27 (0.600)	5 (0.110)	5/244	NT	15.7%	coding (31/741 nt)	PP_2403	chemotaxis protein CheY
	?	NC_002947	2748541 =	27 (0.610)					coding (8/741 nt)	PP_2403	chemotaxis protein CheY

ACCCGTGCCAGATACACTGCAATACAAACTCCCGCAGGCAAGGGCGAACGCGCTCGGTACACTGCGCCCAACCCCCTTTGCACAGGAACCCAGCGCATGGAACACGTCGATCA‑CATCCTGATCGT‑‑‑CG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2748644‑2748518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGC  >  NC_002947/2748541‑2748607                                                                                                                                                                                                        ACCCGTGCCAGATACACTGCAATACAAACTCCCGCAGGCAAGGGCGAACGCGCTCGGTACACTGCGCCCAACCCCCTTTGCACAGGAACCCAGCGCATGGAACACGACGATCAGGAT‑GTGATCGA‑‑‑CGTGTTCCATGCGCTGGGTTCCTGT                                              <  1:362455/150‑1                       TACAAACTCCCGCAGGCAAGGGCGAACGCGCTCGGTACACTGCGCCCAACCCCCTTTGCACAGGAACCCAGCGCATGGAACACGACGATCAGGAT‑GTGATCGA‑‑‑CGTGTTCCATGC                                                           <  2:747804/115‑1                       TACAAACTCCCGCAGGCAAGGGCGAACGCGCTCGGTACACTGCGCCCAACCCCCTTTGCACAGGAACCCAGCGCATGGAACACGACGATCA‑GGATGTGATCGA‑‑‑CGTGTTCCATGC                                                           >  1:747804/1‑115                                                                                                 ATGGAACACGTCGATCA‑CATCCTGATCGTCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGC  <  1:686846/101‑1                                                                                                 ATGGAACACGTCGATCA‑CATCCTGATCGTCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGC  >  2:686846/1‑101                                                                                                                                                                                                        ACCCGTGCCAGATACACTGCAATACAAACTCCCGCAGGCAAGGGCGAACGCGCTCGGTACACTGCGCCCAACCCCCTTTGCACAGGAACCCAGCGCATGGAACACGTCGATCA‑CATCCTGATCGT‑‑‑CG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2748644‑2748518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGC  >  NC_002947/2748541‑2748607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.