New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2748518 =	27 (0.600)	5 (0.110)	5/244	NT	15.7%	coding (31/741 nt)	PP_2403	chemotaxis protein CheY
	?	NC_002947	2748541 =	27 (0.610)					coding (8/741 nt)	PP_2403	chemotaxis protein CheY

TCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCAGGAGGCACAT  >  NC_002947/2748395‑2748666                                                                                                                                                       |                                                                                                                              tCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGtt                                                                                                                            >  2:999286/1‑150 (MQ=255) tCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGtt                                                                                                                            <  2:904472/150‑1 (MQ=255) tCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGtt                                                                                                                            >  1:904472/1‑150 (MQ=255)             tGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTggg                                                                                                                <  2:524318/150‑1 (MQ=255)             tGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTggg                                                                                                                >  1:524318/1‑150 (MQ=255)               atGGCTGGGAGAAAGGCGCGCATCGGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGtt                                                                                                              >  2:321698/2‑150 (MQ=255)                  gCTCCGAGAAGGGTACGTATCGTCCGCCCGTCTGCGACGATGCTGGTGCGCAGGCCGTTCTACTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCt                                                                                                           <  2:672363/150‑1 (MQ=255)                        acccgtgccagatacactgcaatacaaactcccgcaggcaagggcgaacgcgctcggtacactgcgcccaaccccctttgcacaggaacccagcgcatggaacacgacgatcaggatgtgatcgacgTGTTCCATGCGCTGGGTTCCtgt                                                                                                         <  1:362455‑M2/23‑1 (MQ=255)                         gaAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCGTGCGCTGGGTTCCTGTGCaaa                                                                                                    >  2:620230/1‑150 (MQ=255)                                gcgcATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCGTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGtt                                                                                             >  1:280288/1‑150 (MQ=255)                                              tacaaactcccgcaggcaagggcgaacgcgctcggtacactgcgcccaaccccctttgcacaggaacccagcgcatggaacacgacgatcaggatgtgatcgacgTGTTCCATgc                                                                                                                      <  2:747804‑M2/10‑1 (MQ=255)                                              tacaaactcccgcaggcaagggcgaacgcgctcggtacactgcgcccaaccccctttgcacaggaacccagcgcatggaacacgacgatcaggatgtgatcgacgTGTTCCATgc                                                                                                                      >  1:747804‑M2/106‑115 (MQ=255)                                                tCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGa                                                                             <  2:880712/150‑1 (MQ=255)                                                        gATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTc                                                                     >  2:43755/1‑150 (MQ=255)                                                        gATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTc                                                                     <  1:925198/150‑1 (MQ=255)                                                         gcaagggcgaacgcgctcggtacactgcgcccaaccccctttgcacaggaacccagcgcatggaacaCGTCGACGATCAGGATG‑TGATCGACGTGTTCCAt                                                                                                                        <  1:686846‑M1/34‑1 (MQ=255)                                                         gcaagggcgaacgcgctcggtacactgcgcccaaccccctttgcacaggaacccagcgcatggaacaCGTCGACGATCAGGATG‑TGATCGACGTGTTCCAt                                                                                                                        >  2:686846‑M1/68‑101 (MQ=255)                                                            cTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGccc                                                                 <  2:280288/150‑1 (MQ=255)                                                                          gTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGa                                                     >  1:443790/1‑148 (MQ=255)                                                                          gTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGa                                                     <  2:443790/148‑1 (MQ=255)                                                                              ttcttcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGt                                               <  1:240748/150‑1 (MQ=255)                                                                              ttcttcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGt                                               >  1:824323/1‑150 (MQ=255)                                                                                 ttcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTAtt                                            >  1:421227/1‑150 (MQ=255)                                                                                 ttcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTAtt                                            >  1:421275/1‑150 (MQ=255)                                                                                  tcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTg                                           >  2:1143459/1‑150 (MQ=255)                                                                                    aGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCa                                         <  1:43755/150‑1 (MQ=255)                                                                                                     ttCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCa                                         >  1:888661/1‑133 (MQ=255)                                                                                                     ttCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCa                                         <  2:888661/133‑1 (MQ=255)                                                                                                     acaggaacccagcgcatggaacaCG‑‑‑TCGATCAC‑ATCCTGATCGTCGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGt                        <  1:362455‑M1/127‑1 (MQ=255)                                                                                                         cgGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAggg                    <  1:620230/150‑1 (MQ=255)                                                                                                                 gcgGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATAcagca            <  1:321698/150‑1 (MQ=255)                                                                                                                  gcatggaacaCG‑‑‑TCGATCACATCC‑TGATCGTCGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTa                                              >  1:747804‑M1/11‑115 (MQ=255)                                                                                                                  gcatggaacaCG‑‑‑TCGATCAC‑ATCCTGATCGTCGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTa                                              <  2:747804‑M1/105‑1 (MQ=255)                                                                                                                     atggaacacgtcgatcacatcctgatcgtcgacgTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGc                                                             >  2:686846‑M2/35‑101 (MQ=255)                                                                                                                     atggaacacgtcgatcacatcctgatcgtcgacgTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGc                                                             <  1:686846‑M2/67‑1 (MQ=255)                                                                                                                      cgtcgtcg‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCaggagg       <  2:824323/150‑1 (MQ=255)                                                                                                                      cgtcgtcg‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCaggagg       <  1:999286/150‑1 (MQ=255)                                                                                                                           tcg‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCAGGAGGCACAt  <  1:971646/150‑1 (MQ=255)                                                                                                                                         gATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAgt                                                                                    >  1:814698/1‑57 (MQ=255)                                                                                                                                         gATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAgt                                                                                    <  2:814698/57‑1 (MQ=255)                                                                                                                                                       |                                                                                                                              TCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCAGGAGGCACAT  >  NC_002947/2748395‑2748666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.