New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2748518 = | 27 (0.600) | 5 (0.110) | 5/244 | NT | 15.7% | coding (31/741 nt) | PP_2403 | chemotaxis protein CheY |
? | NC_002947 | 2748541 = | 27 (0.610) | coding (8/741 nt) | PP_2403 | chemotaxis protein CheY |
ATCATGATGTCGAGCACGATCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCAGGAGGCACAT > NC_002947/2748376‑2748666 | atcatGATGTCGAGCACGATCAGGTCGACGCTGTGGCCTCCGAGAAGAGCGAGAATAGGCCGCCCGCCCGTTACCATGCTGGCGCGCAGGCGGTCCTTCGTCAGGTAGTGGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTcg‑‑‑acgccg < 2:93991/150‑4 (MQ=255) tCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGtt > 2:999286/1‑150 (MQ=255) tCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGtt < 2:904472/150‑1 (MQ=255) tCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGtt > 1:904472/1‑150 (MQ=255) tGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTggg < 2:524318/150‑1 (MQ=255) tGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTggg > 1:524318/1‑150 (MQ=255) atGGCTGGGAGAAAGGCGCGCATCGGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGtt > 2:321698/2‑150 (MQ=255) gCTCCGAGAAGGGTACGTATCGTCCGCCCGTCTGCGACGATGCTGGTGCGCAGGCCGTTCTACTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCt < 2:672363/150‑1 (MQ=255) ttCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTcg‑‑‑ac < 2:572964/108‑1 (MQ=255) ttCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTcg‑‑‑ac > 1:572964/1‑108 (MQ=255) gaAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCGTGCGCTGGGTTCCTGTGCaaa > 2:620230/1‑150 (MQ=255) gcgcATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCGTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGtt > 1:280288/1‑150 (MQ=255) tCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGa < 2:880712/150‑1 (MQ=255) gATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTc < 1:925198/150‑1 (MQ=255) gATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTc > 2:43755/1‑150 (MQ=255) gcaagggcgaacgcgctcggtacactgcgcccaaccccctttgcacaggaacccagcgcatggaacaCGTCGACGATCAGGATG‑TGATCGACGTGTTCCAt > 2:686846‑M1/68‑101 (MQ=255) gcaagggcgaacgcgctcggtacactgcgcccaaccccctttgcacaggaacccagcgcatggaacaCGTCGACGATCAGGATG‑TGATCGACGTGTTCCAt < 1:686846‑M1/34‑1 (MQ=255) cTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGccc < 2:280288/150‑1 (MQ=255) gTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGa > 1:443790/1‑148 (MQ=255) gTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGa < 2:443790/148‑1 (MQ=255) ttcttcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGt < 1:240748/150‑1 (MQ=255) ttcttcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGt > 1:824323/1‑150 (MQ=255) ttcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTAtt > 1:421275/1‑150 (MQ=255) ttcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTAtt > 1:421227/1‑150 (MQ=255) tcAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTg > 2:1143459/1‑150 (MQ=255) aGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCa < 1:43755/150‑1 (MQ=255) ttCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCa > 1:888661/1‑133 (MQ=255) ttCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCa < 2:888661/133‑1 (MQ=255) acaggaacccagcgcatggaacaCG‑‑‑TCGATCAC‑ATCCTGATCGTCGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGt < 1:362455‑M1/127‑1 (MQ=255) cgGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAggg < 1:620230/150‑1 (MQ=255) gcgGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATAcagca < 1:321698/150‑1 (MQ=255) gcatggaacaCG‑‑‑TCGATCACATCC‑TGATCGTCGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTa > 1:747804‑M1/11‑115 (MQ=255) gcatggaacaCG‑‑‑TCGATCAC‑ATCCTGATCGTCGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTa < 2:747804‑M1/105‑1 (MQ=255) cgtcgtcg‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCaggagg < 1:999286/150‑1 (MQ=255) cgtcgtcg‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCaggagg < 2:824323/150‑1 (MQ=255) tcg‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCAGGAGGCACAt < 1:971646/150‑1 (MQ=255) | ATCATGATGTCGAGCACGATCAGGTCGACGCTGTTGGCTTCGAGAAAGGCGCGCATCTGCCGGCCGTCTGCAACGATGCTGGTGCGCAGGCCGTTCTTCTTCAGGTAATTGCCGACCAGTTCGCGGATCTCGCGGTCGTCGTCG‑‑‑ACGATCAGGATG‑TGATCGACGTGTTCCATGCGCTGGGTTCCTGTGCAAAGGGGGTTGGGCGCAGTGTACCGAGCGCGTTCGCCCTTGCCTGCGGGAGTTTGTATTGCAGTGTATCTGGCACGGGTAGGGATACAGCAGGAGGCACAT > NC_002947/2748376‑2748666 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |