New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2908576	30 (0.660)	3 (0.070)	3/238	NT	9.0%	coding (162/1341 nt)	hasE	secretion metalloprotease
	?	NC_002947	= 2908596	32 (0.740)					coding (142/1341 nt)	hasE	secretion metalloprotease

GCCACCGCACGCAGGGCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2908430‑2908576 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgCCACTGGACGCCGGCGTGGTCGCCACCGGTACGGTCAAG  <  NC_002947/2908596‑2908558                                                                                                                                                                                            GCCACCGCACGCAGGGCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGCCA                                      >  1:263122/1‑150                                    CTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGCCACTGGACGCCGGCGTGGTCGCCACCGGTACGGTCAA   <  2:263122/150‑1                                                                                         CACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGCCACTGGACGCCGGCGTGGTCGCCACCGGTACGGTCAAG  <  1:1097684/98‑1                                                                                         CACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGCCACTGGACGCCGGCGTGGTCGCCACCGGTACGGTCAAG  >  2:1097684/1‑98                                                                                          ACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTG                                            <  1:399374/55‑1                                                                                          ACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTG                                            >  2:399374/1‑55                                                                                                                                                                                            GCCACCGCACGCAGGGCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2908430‑2908576 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgCCACTGGACGCCGGCGTGGTCGCCACCGGTACGGTCAAG  <  NC_002947/2908596‑2908558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.