New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2908576	30 (0.660)	3 (0.070)	3/238	NT	9.0%	coding (162/1341 nt)	hasE	secretion metalloprotease
	?	NC_002947	= 2908596	32 (0.740)					coding (142/1341 nt)	hasE	secretion metalloprotease

GCCACCGCACGCAGGGCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAGGTGGCTGCTCTCGGCGGGGATCAGTTCGGCAT  >  NC_002947/2908430‑2908721                                                                                                                                                   |                                                                                                                                                  gCCACCGCACGCAGGGCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGcca                                                                                                                                                >  1:263122‑M1/1‑147 (MQ=255)    aCCGCACGCAGGGCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACg                                                                                                                                             >  1:668240/1‑150 (MQ=255)      cgcacgcaGGGCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGcc                                                                                                                                           <  2:812962/150‑1 (MQ=255)                gCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGt                                                                                                                                 <  1:45267/150‑1 (MQ=255)                               acTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGAc                                                                                                                  <  2:609981/150‑1 (MQ=255)                               acTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGAc                                                                                                                  >  1:556272/1‑150 (MQ=255)                                  tCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACcac                                                                                                               <  1:353580/150‑1 (MQ=255)                                    cTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGccactggacgccggcgtggtcgccaccggtacggtcaa                                                                                                             <  2:263122‑M1/150‑39 (MQ=255)                                    cTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCAcag                                                                                                             >  2:111688/1‑150 (MQ=255)                                                caccacATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAAccgcc                                                                                                 >  2:996618/1‑150 (MQ=255)                                                   cacaTCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTTACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGaa                                                                                              >  1:514121/1‑150 (MQ=255)                                                      aTCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGcc                                                                                           >  1:848771/1‑150 (MQ=255)                                                          ccTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGGCCACAGCAGGAAACCGCCGAAGCCGGCg                                                                                       >  1:687467/1‑150 (MQ=255)                                                                   aCCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGcc                                                                                                                                           <  1:285465/89‑1 (MQ=255)                                                                   aCCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGcc                                                                                                                                           >  2:285465/1‑89 (MQ=255)                                                                     cATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCa                                                                            >  1:456177/1‑150 (MQ=255)                                                                             cTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGcccc                                                                    >  1:34914/1‑150 (MQ=255)                                                                                   cGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTa                                                              <  2:456177/150‑1 (MQ=255)                                                                                         cACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGccactggacgccggcgtggtcgccaccggtacggtcaag                                                                                                            <  1:1097684‑M1/98‑40 (MQ=255)                                                                                         cACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGccactggacgccggcgtggtcgccaccggtacggtcaag                                                                                                            >  2:1097684‑M1/1‑59 (MQ=255)                                                                                                   gTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGGCCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTc                                              <  2:687467/150‑1 (MQ=255)                                                                                                   gTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTc                                              <  2:556272/150‑1 (MQ=255)                                                                                                        ggACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAgat                                         <  1:111688/150‑1 (MQ=255)                                                                                                              ccTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCa                                   >  2:729721/1‑150 (MQ=255)                                                                                                                tttCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAgg                                 <  2:848771/150‑1 (MQ=255)                                                                                                                     gTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAgatcgat                                     <  1:1028456/141‑1 (MQ=255)                                                                                                                     gTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAgatcgat                                     >  2:1028456/1‑141 (MQ=255)                                                                                                                               aCCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAgg                                 <  2:681785/135‑1 (MQ=255)                                                                                                                               aCCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAgg                                 >  1:681785/1‑135 (MQ=255)                                                                                                                                ccTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAGGTGGCTGCTCTcggcgg                 <  1:729721/150‑1 (MQ=255)                                                                                                                                 cTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGcgccaccggtacggtcaaggtcaccagcaaccgaaaggcagtccagcacctgagcggtg                                                                    <  1:1097684‑M2/98‑60 (MQ=255)                                                                                                                                 cTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGcgccaccggtacggtcaaggtcaccagcaaccgaaaggcagtccagcacctgagcggtg                                                                    >  2:1097684‑M2/1‑39 (MQ=255)                                                                                                                                  ttGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGcgccaccggtacggtcaaggtcaccagcaaccgaaaggcagtccagcacctgagcggtggcaccgttgaagcgatcatggtgcgcgaaggcgatgtggtgaagaaaggccag               <  2:263122‑M2/150‑113 (MQ=255)                                                                                                                                     aCCGTACCGGTGGAGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAGGTGGCTGCTCTCGGCGGGGATc            >  2:443150/1‑150 (MQ=255)                                                                                                                                      ccGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAGGTGGCTGCTCTCGGCGGGGATCa           <  1:443150/150‑1 (MQ=255)                                                                                                                                      ccGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAGGTGGCTGCTCTCGGCGGGGATCa           <  1:599954/150‑1 (MQ=255)                                                                                                                                       cGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAGGTGGCTGCTCTCGGCGGGGATCAg          >  1:965478/1‑150 (MQ=255)                                                                                                                                               tGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAGGTGGCTGCTCTCGGCGGGGATCAGTTCGGCAt  >  2:842458/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GCCACCGCACGCAGGGCATCGAGGCGCACCACTTCCTGGCCTTTCTTCACCACATCGCCTTCGCGCACCATGATCGCTTCAACGGTGCCACCGCTCAGGTGCTGGACTGCCTTTCGGTTGCTGGTGACCTTGACCGTACCGGTGGCGACCACGCCGGCGTCCAGTGGCGCCAGGCAGGACCACAGCAGGAAACCGCCGAAGCCGGCGATGACCAGCCATACGCCCCAGCGTACCGGGCGGCCCGCGTCCAGATCGATCAGGTGGCTGCTCTCGGCGGGGATCAGTTCGGCAT  >  NC_002947/2908430‑2908721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.