New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2943021 =	38 (0.840)	5 (0.120)	5/238	NT	10.9%	intergenic (‑779/‑594)	PP_2575/PP_2577	hypothetical protein/paraquat‑inducible protein B
	?	NC_002947	2943057 =	45 (1.040)					intergenic (‑815/‑558)	PP_2575/PP_2577	hypothetical protein/paraquat‑inducible protein B

TGCGCGTGTCGCATGCCTGGCCACAGCCATGGCA‑CAGACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2943061‑2943021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacacGCGCAGTGGCGCGCACACCTGCAACCGTTGCGGCGCCGTCATTCACCGGCGCAAGGCCAATGCCATCAGCCGTGGCTGGGCGTTTCTGCTGGCAGCCCTGGTTTTCTACATCCCCGCCAACCTGCTGCCGGTGATGCACACCGAAA  >  NC_002947/2943057‑2943202                                                                                                                                                                                              TGCGCGTGTCGCATGCCTGGCCACAGCCATGGCA‑CAGACACGCGCAGTGGCGCGCACACCTGCAACCGTTGCGGCGCCGTCATTCACCGGCGCAAGGCCAATGCCATCAGCCGTGGCTGGGCGTTTCTGCT                                                          >  1:504406/1‑131 TGCGCGTGTCGCATGCCTGGCCACAGCCATGGCA‑CAGACACGCGCAGTGGCGCGCACACCTGCAACCGTTGCGGCGCCGTCATTCACCGGCGCAAGGCCAATGCCATCAGCCGTGGCTGGGCGTTTCTGCT                                                          <  2:504406/131‑1         TCGCATGCCTGGCCACAGCCATGGCA‑CAGACACGCGCAGTGGCGCGCACACCTGCAACCGTTGCGGCGCCGTCATTCACCGGCGCAAGGCCAATGCCATCAGCCGTGGCTGG                                                                     <  1:894152/112‑1         TCGCATGCCTGGCCACAGCCATGGCA‑CAGACACGCGCAGTGGCGCGCACACCTGCAACCGTTGCGGCGCCGTCATTCACCGGCGCAAGGCCAATGCCATCAGCCGTGGCTGG                                                                     >  2:894152/1‑112             ATGCCTGGCCACAGCCATGGCATGCGACACGCGCAGTGACGCGCACACCTGCAACCGTTGCGGCGCCGTCATTCACCGGCGCAAGGCCAATGCCATCAGCCGTGGCTGGGCGTTTCTGCTGGCAGCCCTGGTTTTCTACATCCCCGCCAA                            >  2:1051561/1‑150                                       ACACGCGCAGTGGCGCGCACACCTGCAACCGTTGCGGCGCCGTCATTCACCGGCGCAAGGCCAATGCCATCAGCCGTGGCTGGGCGTTTCTGCTGGCAGCCCTGGTTTTCTACATCCCCGCCAACCTGCTGCCGGTGATGCACACCGAAA  <  1:844751/150‑1                                                                                                                                                                                              TGCGCGTGTCGCATGCCTGGCCACAGCCATGGCA‑CAGACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2943061‑2943021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacacGCGCAGTGGCGCGCACACCTGCAACCGTTGCGGCGCCGTCATTCACCGGCGCAAGGCCAATGCCATCAGCCGTGGCTGGGCGTTTCTGCTGGCAGCCCTGGTTTTCTACATCCCCGCCAACCTGCTGCCGGTGATGCACACCGAAA  >  NC_002947/2943057‑2943202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.