New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3248965 =	42 (0.930)	4 (0.090)	4/238	NT	9.4%	coding (542/1704 nt)	ureC	urease subunit alpha
	?	NC_002947	3249080 =	37 (0.850)					coding (657/1704 nt)	ureC	urease subunit alpha

AACAGTCGATGGCTGCTGGCGTAGAGCCCCAGTCTTCATGCAGCTTGAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3249117‑3248965 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcaTGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTG  >  NC_002947/3249080‑3249122                                                                                                                                                                                                      AACAGTCGATGGCTGCTGGCGTAGAGCCCCAGTCTTCATGCAGCTTGAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCT                                                >  1:385271/1‑150     GTCGATGGCTGCTGGCGTAGAGCCCCAGTCTTCATGCAGCTTGAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCT                                                <  1:787556/146‑1     GTCGATGGCTGCTGGCGTAGAGCCCCAGTCTTCATGCAGCTTGAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCT                                                >  2:787556/1‑146                           CCCCAGTCTTCATGCAGCTTGAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCTGC                                              >  1:1133561/1‑126                           CCCCAGTCTTCATGCAGCTTGAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCTGC                                              <  2:1133561/126‑1                                   TTCATGCAGCTTGAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATC              >  2:179757/1‑150                                               GAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTG  <  1:179757/150‑1                                                   CCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCA                <  1:1013601/132‑1                                                   CCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCA                >  2:1013601/1‑132                                                                                                                                                                                                      AACAGTCGATGGCTGCTGGCGTAGAGCCCCAGTCTTCATGCAGCTTGAGCCCGACAGCGCCTGCGGCAATCTGCTCGCGCAGCGCGTCTGGCCGCGAGGCATTGCCCTTGCCCAGCAGCCCGATGTTGATCGGCAAGCTGTCGGCAGCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3249117‑3248965 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcaTGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTG  >  NC_002947/3249080‑3249122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.