| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3248965 = | 42 (0.930) | 4 (0.090) | 4/238 | NT | 9.4% | coding (542/1704 nt) | ureC | urease subunit alpha |
| ? | NC_002947 | 3249080 = | 37 (0.850) | coding (657/1704 nt) | ureC | urease subunit alpha | |||||
ACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGTTGGCGGCCATCGGCGACCGCA > NC_002947/3248934‑3249222 | gatggctgctggcgtagagccccagtcttcaTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGaa > 2:179757‑M1/32‑150 (MQ=255) gCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGa < 1:492520/150‑1 (MQ=255) cGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTg < 2:627847/150‑1 (MQ=255) cGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTg < 1:491864/150‑1 (MQ=255) tGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGctct > 2:241736/1‑150 (MQ=255) gcgcgcATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCcagca < 1:511852/150‑1 (MQ=255) gcgcATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCagcagc > 1:115519/1‑150 (MQ=255) ttcatgcagcttgagcccgacagcgcctgcggcaatctgctcgcgcagcgcgtctggccgcgaggcattgcccttgcccagcagcccgatgttgatcggcaagctgtcggcagcctgcaTGAAGACTGGGGCTCTACGCCAGCAGCCATc > 2:179757‑M2/120‑150 (MQ=255) tGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCg > 2:422829/1‑150 (MQ=255) GCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTgggg > 1:1133561‑M1/1‑126 (MQ=255) GCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTgggg < 2:1133561‑M1/126‑1 (MQ=255) AGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGAc < 1:787556‑M1/146‑1 (MQ=255) AGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGAc > 2:787556‑M1/1‑146 (MQ=255) AGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGtt > 1:385271‑M1/1‑150 (MQ=255) tGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCt > 1:40537/1‑150 (MQ=255) gagcccgacagcgcctgcggcaatctgctcgcgcagcgcgtctggccgcgaggcattgcccttgcccagcagcccgatgttgatcggcaagctgtcggcagcctgcaTGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTg < 1:179757‑M2/43‑1 (MQ=255) ccGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTgg > 2:307656/1‑150 (MQ=255) ccGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTgg < 1:422829/150‑1 (MQ=255) cGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTggg > 1:386770/1‑150 (MQ=255) ccgacagcgcctgcggcaatctgctcgcgcagcgcgtctggccgcgaggcattgcccttgcccagcagcccgatgttgatcggcaagctgtcggcagcctgcaTGAAGACTGGGGCTCTACGCCAGCAGCCa > 2:1013601‑M2/104‑132 (MQ=255) ccgacagcgcctgcggcaatctgctcgcgcagcgcgtctggccgcgaggcattgcccttgcccagcagcccgatgttgatcggcaagctgtcggcagcctgcaTGAAGACTGGGGCTCTACGCCAGCAGCCa < 1:1013601‑M2/29‑1 (MQ=255) cAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCAGCAGGCGCTGTCGGGCTCAAGCTACATGAAGACGGGGGCTCTACGCCAGCAGGCATCGACTGTTGCCTGGGCGt < 2:190239/150‑1 (MQ=255) aGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTg < 2:583418/150‑1 (MQ=255) cAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCTGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAgcgtga < 1:948127/150‑6 (MQ=255) cAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAAt < 2:40537/150‑1 (MQ=255) cAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAAt < 1:57391/150‑1 (MQ=255) gggCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGAAAATGGATATc > 2:669282/1‑150 (MQ=255) ggCTGCTGGTCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATcc > 2:923793/1‑150 (MQ=255) gcaagggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGcc > 2:422294/1‑125 (MQ=255) gcaagggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGcc < 1:422294/125‑1 (MQ=255) gcaagggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGa < 2:386770/150‑1 (MQ=255) gcaagggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGa > 2:625359/1‑150 (MQ=255) caagggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGAt < 2:1141587/150‑1 (MQ=255) gcgGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCt < 1:545353/150‑1 (MQ=255) ccAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTgg < 2:877778/103‑1 (MQ=255) ccAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTgg > 1:877778/1‑103 (MQ=255) aCGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATgg > 2:148337/1‑111 (MQ=255) aCGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATgg < 1:148337/111‑1 (MQ=255) cgcTGCGCGAGCAGATTGCCGCAGGCGATGTCGGGCTCAAGCTGGATGAAGACTGTGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGCACTGGATATCAAGGTGGCGATTAACACCGACACCCTCAACGAGTCgg < 2:73835/150‑1 (MQ=255) gAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACAcc < 1:581825/129‑1 (MQ=255) gAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACAcc > 2:581825/1‑129 (MQ=255) gAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATc > 1:431098/1‑150 (MQ=255) cAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGaa < 1:307656/150‑1 (MQ=255) ccGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGt > 1:592244/1‑150 (MQ=255) cGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGc < 1:242971/102‑1 (MQ=255) cGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGc > 2:242971/1‑102 (MQ=255) cAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGTTgg < 1:923793/150‑1 (MQ=255) aGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGTTGGCGGCCATCGGCGACCGCa > 1:877745/1‑150 (MQ=255) | ACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGTTGGCGGCCATCGGCGACCGCA > NC_002947/3248934‑3249222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |