New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3248965 =	42 (0.930)	4 (0.090)	4/238	NT	9.4%	coding (542/1704 nt)	ureC	urease subunit alpha
	?	NC_002947	3249080 =	37 (0.850)					coding (657/1704 nt)	ureC	urease subunit alpha

ATCCACTTCATTTGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCG  >  NC_002947/3248826‑3249111                                                                                                                                            |                                                                                                                                                   atCCACTTCATTTGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGcc                                                                                                                                          <  2:876146/150‑1 (MQ=255) atCCACTTCATTTGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGcc                                                                                                                                          <  2:367700/150‑1 (MQ=255)     aCTTCATTTGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACa                                                                                                                                      <  2:392995/150‑1 (MQ=255)     aCTTCATTTGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACa                                                                                                                                      <  1:884991/150‑1 (MQ=255)      cTTCATTTGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCAGGTTCATCGGAGGTGGGACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGACGACAg                                                                                                                                     >  1:583418/1‑150 (MQ=255)       ttCATTTGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGc                                                                                                                                    <  2:790439/150‑1 (MQ=255)           tttGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGc                                                                                                                                >  2:801594/1‑150 (MQ=255)           tttGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGc                                                                                                                                <  2:1048803/150‑1 (MQ=255)           tttGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTAGAGCACCAGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGc                                                                                                                                >  1:73835/1‑150 (MQ=255)                   cagcagGTGGCCGAGGCATTGAACAGCGGTGTCACCACGTTCATCCGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCGGCCAGCTTGCCGATCAAc                                                                                                                        <  2:74983/150‑1 (MQ=255)                      cagGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGACCCCACCTGCACGCCCGGCCCCTTGTACCTTTCTCGCATGTTGTAGGCTGCCGACAGCTTGCCGATCAACATc                                                                                                                     <  1:626282/150‑1 (MQ=255)                         gTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCggg                                                                                                                  >  1:573488/1‑150 (MQ=255)                          tGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGgc                                                                                                                 <  1:801594/150‑1 (MQ=255)                               gAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAg                                                                                                                                                >  1:1124763/1‑114 (MQ=255)                               gAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAg                                                                                                                                                <  2:1124763/114‑1 (MQ=255)                                aGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTgg                                                                                                           <  2:573488/150‑1 (MQ=255)                                     ttGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTgggcaa                                                                                                       <  1:756456/149‑1 (MQ=255)                                     ttGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTgggcaa                                                                                                       >  2:756456/1‑149 (MQ=255)                                            gCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGcc                                                                                                                                          >  2:82474/1‑107 (MQ=255)                                            gCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGcc                                                                                                                                          <  1:82474/107‑1 (MQ=255)                                                    accacGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCgg                                                                                       >  2:511852/1‑150 (MQ=255)                                                     ccacGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGc                                                                                      >  2:57391/1‑150 (MQ=255)                                                         gTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTCCCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGa                                                                                  >  1:190239/1‑150 (MQ=255)                                                                             gcccggacACTGGCAGCAATGCCACGCCCTTCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCATGCGGCCGACAGCTTGCCGATCAACATCGCGCCGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCTCGAGCACATTg                                                              <  2:82141/148‑1 (MQ=255)                                                                                       tGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGgcgc                                                    >  2:545353/1‑150 (MQ=255)                                                                                       tGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGgcgc                                                    >  2:385271/1‑150 (MQ=255)                                                                                        ggCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATg                                                                                               <  2:970732/106‑1 (MQ=255)                                                                                        ggCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATg                                                                                               >  1:970732/1‑106 (MQ=255)                                                                                         gCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGc                                                                    >  1:1189475/1‑132 (MQ=255)                                                                                         gCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGc                                                                    <  2:1189475/132‑1 (MQ=255)                                                                                            ccAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCg                                               >  1:1141587/1‑150 (MQ=255)                                                                                            ccAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCg                                               >  2:492520/1‑150 (MQ=255)                                                                                              aaTGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCggg                                             >  2:491864/1‑150 (MQ=255)                                                                                                 caggcaacagtcgatggctgctggcgtagagccccagtcttcaTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTc                                          <  1:179757‑M1/107‑1 (MQ=255)                                                                                                   caccacCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCgg                                              <  2:73855/144‑1 (MQ=255)                                                                                                   caccacCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCgg                                              >  1:73855/1‑144 (MQ=255)                                                                                                      caccTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAAt                                                                                                <  1:697441/91‑1 (MQ=255)                                                                                                      caccTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAAt                                                                                                >  2:697441/1‑91 (MQ=255)                                                                                                       accTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTg                                    >  1:627847/1‑150 (MQ=255)                                                                                                             gatggctgctggcgtagagccccagtcttcaTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGaa                              >  2:179757‑M1/32‑150 (MQ=255)                                                                                                               tggctgctggcgtagagccccagtcttcaTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCgg                                              >  2:1013601‑M1/30‑132 (MQ=255)                                                                                                               tggctgctggcgtagagccccagtcttcaTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCgg                                              <  1:1013601‑M1/103‑1 (MQ=255)                                                                                                               gCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGa                            <  1:492520/150‑1 (MQ=255)                                                                                                                  cGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTg                         <  2:627847/150‑1 (MQ=255)                                                                                                                  cGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTg                         <  1:491864/150‑1 (MQ=255)                                                                                                                         tGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGctct                  >  2:241736/1‑150 (MQ=255)                                                                                                                                  gcgcgcATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCcagca         <  1:511852/150‑1 (MQ=255)                                                                                                                                    gcgcATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCagcagc       >  1:115519/1‑150 (MQ=255)                                                                                                                                         tGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCg  >  2:422829/1‑150 (MQ=255)                                                                                                                                            |                                                                                                                                                   ATCCACTTCATTTGCCCACAGCAGGTGGACGAGGCATTGAACAGCGGTGTCACCACGTTCATCGGCGGTGGAACCGGGCCGGCCACTGGCACCAATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCG  >  NC_002947/3248826‑3249111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.