New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3479309	22 (0.490)	4 (0.090)	4/236	NT	15.4%	coding (1953/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	= 3479353	23 (0.540)					coding (1909/2496 nt)	PP_3090	OmpA domain‑containing protein

GCAGTGACTGGGCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3479155‑3479309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCC  <  NC_002947/3479353‑3479210                                                                                                                                                                                                                                                                                                             GCAGTGACTGGGCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCAC                                                                                                                                                       >  1:557579/1‑150     TGACTGGGCCCACAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGC                                                                                                                                                   >  2:176436/1‑150              CCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCATCGCCCG                                                                                                                                          >  1:607611/1‑150               CGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCAC                                                                                                                                                       <  1:753527/136‑1               CGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCAC                                                                                                                                                       >  2:753527/1‑136                                           TGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTG                                                                                                             >  1:962463/1‑150                                                   AGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAG                                                                                                     <  2:962463/150‑1                                                          CGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTG                                                                                              <  2:607611/150‑1                                                                                                                                                      CCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCC  >  1:553959/1‑150                                                                                                                                                      CCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCC  >  1:777993/1‑150                                                                                                                                                      CCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCC  >  2:496397/1‑150                                                                                                                                                                                                                                                                                                             GCAGTGACTGGGCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3479155‑3479309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCC  <  NC_002947/3479353‑3479210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.