New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3479309	22 (0.490)	4 (0.090)	4/236	NT	15.4%	coding (1953/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	= 3479353	23 (0.540)					coding (1909/2496 nt)	PP_3090	OmpA domain‑containing protein

CTGGGCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCC  >  NC_002947/3479162‑3479458                                                                                                                                                    |                                                                                                                                                      cTGGGCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTc                                                                                                                                                     <  2:1057135/150‑1 (MQ=255)  tGGGCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCg                                                                                                                                                    >  1:1069577/1‑150 (MQ=255)   gggCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGc                                                                                                                                                   >  1:496397/1‑150 (MQ=255)    ggCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCt                                                                                                                                                  <  2:1069577/150‑1 (MQ=255)      cccACAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGc                                                                                                                                                <  1:176436/150‑1 (MQ=255)       ccGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCatcgcccg                                                                                                                                               >  1:607611‑M1/1‑142 (MQ=255)       ccGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGcc                                                                                                                                               >  2:777993/1‑150 (MQ=255)                    aTGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATg                                                                                                                                  <  2:745612/150‑1 (MQ=255)                        aGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGACCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGctct                                                                                                                              <  1:439280/150‑1 (MQ=255)                         gTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCtt                                                                                                                             >  2:960144/1‑150 (MQ=255)                              gcgAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGcc                                                                                                                          <  2:837689/148‑1 (MQ=255)                              gcgAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGcc                                                                                                                          >  1:837689/1‑148 (MQ=255)                              gcgAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCgg                                                                                                                        >  2:719976/1‑150 (MQ=255)                                    tGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCatcgcccgccagaccggcaagagcatggccgccgctg                                                                                                                  >  1:962463‑M1/1‑113 (MQ=255)                                      gACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTggcgg                                                                                                                >  1:1143610/1‑150 (MQ=255)                                      gACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTggcgg                                                                                                                >  2:1186734/1‑150 (MQ=255)                                      gACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTggcgg                                                                                                                >  2:553959/1‑150 (MQ=255)                                         aTCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTggcgggcg                                                                                                             <  1:1186734/150‑1 (MQ=255)                                            aGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCatcgcccgccagaccggcaagagcatggccgccgctggcagcgag                                                                                                          <  2:962463‑M1/150‑46 (MQ=255)                                                 ggCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggccgg                                                                                                     >  1:777993‑M2/1‑144 (MQ=255)                                                 ggCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggccgg                                                                                                     >  1:553959‑M2/1‑144 (MQ=255)                                                 ggCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggccgg                                                                                                     >  2:496397‑M2/1‑144 (MQ=255)                                                   cGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCatcgcccgccagaccggcaagagcatggccgccgctggcagcgaggccggtg                                                                                                   <  2:607611‑M1/150‑53 (MQ=255)                                                        tCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCag                                                                                              <  2:557579/150‑1 (MQ=255)                                                          gAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTTGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCCCTTGCCGGTCTGGCCGGCGATTGCCGGGTCCCagta                                                                                            >  2:165373/1‑150 (MQ=255)                                                                   cgGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAg                                                                                   <  1:960144/150‑1 (MQ=255)                                                                         aTCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTgcgc                                                                             >  2:680759/1‑150 (MQ=255)                                                                          tcaggCTCACGGATCGGGTCGCAAGAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTAACACCGGCCTCGCTGTCATCCACGTCCGTGCTCTTGCCGGTCTGCCGGGCGATGACCGGGCCCCACATGTCCGGCATGTGCGcc                                                                            >  2:546768/4‑150 (MQ=255)                                                                                                                               gTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAAc                                                                   <  2:398083/106‑1 (MQ=255)                                                                                                                               gTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAAc                                                                   >  1:398083/1‑106 (MQ=255)                                                                                                                                   tCCTGGTTGCCACCGGCCTCGCTGGCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAgtg                   >  1:35423/1‑150 (MQ=255)                                                                                                                                            ccACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAAAGCCGGGTCGGCATGCTCGCGCCGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGgcc          >  2:1152965/1‑150 (MQ=255)                                                                                                                                             cACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggccggtggcaaccaggactacctgtatgccagccgccagatcacgttctatagcgaccagatccgtgagccagatgtaccgcgcatcctcgacaacg         <  2:607611‑M2/150‑99 (MQ=255)                                                                                                                                              aCCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGTGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGgccgc        <  1:719976/150‑1 (MQ=255)                                                                                                                                               ccGGCCatcgcccgccagaccggcaagagcatggccgccgctggcagcgaggccggtggcaaccaggactacctgtatgccagccgccagatcacgttctatagcgaccagatccgtgagccagatgtaccgcgcatcctcgacaacgcc       >  2:496397‑M1/1‑6 (MQ=255)                                                                                                                                               ccGGCCatcgcccgccagaccggcaagagcatggccgccgctggcagcgaggccggtggcaaccaggactacctgtatgccagccgccagatcacgttctatagcgaccagatccgtgagccagatgtaccgcgcatcctcgacaacgcc       >  1:777993‑M1/1‑6 (MQ=255)                                                                                                                                               ccGGCCatcgcccgccagaccggcaagagcatggccgccgctggcagcgaggccggtggcaaccaggactacctgtatgccagccgccagatcacgttctatagcgaccagatccgtgagccagatgtaccgcgcatcctcgacaacgcc       >  1:553959‑M1/1‑6 (MQ=255)                                                                                                                                                    cTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATggccggtggcaaccaggactacctgtatgccagccgccagatcacgttctatagcgaccagatccgtgagccagatgtaccgcgcatcctcgacaacgccttcct  <  2:962463‑M2/150‑106 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CTGGGCCCGCAGGCTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATGCTCTTGCCGGTCTGGCGGGCGATGGCCGGGTACCAGTAGTCCGGCAGGTGCGCCTTGAGAAACGCCGGGTCGGCATGCTCGCGCTGGCCCGGAGAAAGCATCACGTAAGTGTCCAGGGCCGCCTTTCC  >  NC_002947/3479162‑3479458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.