| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3501498 = | 31 (0.690) | 14 (0.330) | 14/236 | NT | 29.0% | coding (189/192 nt) | PP_5567 | hypothetical protein |
| ? | NC_002947 | 5061301 = | 39 (0.910) | intergenic (‑420/‑71) | PP_4458/PP_4459 | opine ABC transporter substrate‑binding protein/transposase | |||||
AGTCAGTCCCCCAACCGGTTGCGTCATCACTCAAGGATGCTCTGGGCTAGGCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3501622‑3501498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTAGC > NC_002947/5061301‑5061449 AGTCAGTCCCCCAACCGGTTGCGTCATCACTCAAGGATGCTCTGGGCTAGGCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTC < 1:707028/150‑1 GTCAGTCCCCCAACCGGTTGCGTCATCACTCAAGGATGCTCTGGGCTAGGCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTT < 1:1005086/119‑1 GTCAGTCCCCCAACCGGTTGCGTCATCACTCAAGGATGCTCTGGGCTAGGCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTT > 2:1005086/1‑119 CCCAACCGGTTGCGTCATCACTCAAGGATGCTCTGGGCTAGGCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGC > 1:250014/1‑150 ACTCACGGATGCTCTGGGCTAAGCGATATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTCGGCCAGTTGGCGTTCGATGCTGACTTGCTAGTGTTCTGTCCCAAAAATAAGTATTCCCTTTGAGCTACACTTCCTTGGTCCAAC > 2:453830/1‑150 CTAGGCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCC < 2:497754/122‑1 CTAGGCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCC > 1:497754/1‑122 GCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCC < 1:104249/101‑1 GCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCC > 2:104249/1‑101 AACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATC < 2:250014/150‑1 ATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTC < 1:483544/137‑1 ATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTC > 2:483544/1‑137 GTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAA > 2:1197819/1‑136 GTTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAA < 1:1197819/136‑1 TTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAACAAGTATTCCA < 1:132204/52‑1 TTGGATTTCGATGCTGACTTGCTAGTGTTCTGTCTCAAAAACAAGTATTCCA > 2:132204/1‑52 TGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACCAGTTGAGCGGAACCGACGAGTTCGGTCTGCCACCA < 1:337955/150‑1 GCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTT > 1:842232/1‑118 GCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTT < 2:842232/118‑1 TAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTA < 2:831427/150‑1 TAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCG > 2:1205569/1‑127 TAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCG < 1:1205569/127‑1 GTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTAGC > 2:878520/1‑150 GTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACCATGAACCAATTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTAGC < 2:78865/150‑1 AGTCAGTCCCCCAACCGGTTGCGTCATCACTCAAGGATGCTCTGGGCTAGGCGCTATGCTGTCCAACATATGCGATGTAGCGCGAGCGGCCTTTGGCCAGTTGGATTTCGATGCTGACTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3501622‑3501498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTAGC > NC_002947/5061301‑5061449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |