New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3501498 =	31 (0.690)	14 (0.330)	14/236	NT	29.0%	coding (189/192 nt)	PP_5567	hypothetical protein
	?	NC_002947	5061301 =	39 (0.910)					intergenic (‑420/‑71)	PP_4458/PP_4459	opine ABC transporter substrate‑binding protein/transposase

ATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTAGC  >  NC_002947/5061160‑5061449                                                                                                                                              |                                                                                                                                                     aTGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGtc                                                                                                                                              <  1:673031/150‑1 (MQ=255)        aTCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCaaaaa                                                                                                                                       >  1:316303/1‑150 (MQ=255)           gTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATaa                                                                                                                                    <  1:712096/150‑1 (MQ=255)           gTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCANCNCACATTNAGGCCGCACTGANTCTGCTAGTGTTCTGTCTCAAAAANaa                                                                                                                                    <  1:711854/150‑1 (MQ=255)                tACGCCCGCTCCCTTCAGTACCCTTTCGTTCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTAtt                                                                                                                               <  2:316303/150‑1 (MQ=255)                 agtcagtcccccaaccggttgcgtcatcactcaaggatgctctgggctaggcgctatgctgtccaacatatgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTc                                                                                                                              <  1:707028‑M2/25‑1 (MQ=255)                 aCGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTc                                                                                                                              >  1:663308/1‑150 (MQ=255)                        cTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGa                                                                                                                       >  2:337955/1‑150 (MQ=255)                          cccaaccggttgcgtcatcactcaaggatgctctgggctaggcgctatgctgtccaacatatgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGc                                                                                                                     >  1:250014‑M2/117‑150 (MQ=255)                                        ttCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGCGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGt                                                                                                       <  1:1182068/150‑1 (MQ=255)                                             actcacggatgctctgggctaagcgatatgctgtccaacatatgcgatgtagcgcgagcggccttcggccagttggcgttcgatgctgacttgctagTGTTCTGTCCCAAAAATAAGTATTCCCTTTGAGCTACACTTCCTTGGTCCAAc                                                                                                  >  2:453830‑M2/98‑150 (MQ=255)                                                   acTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGAcg                                                                                            >  1:747096/1‑150 (MQ=255)                                                     tAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGCCAAACAGGAcgcg                                                                                          >  1:865314/1‑150 (MQ=255)                                                      aaGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCgg                                                                                         <  2:747096/150‑1 (MQ=255)                                                               ctaggcgctatgctgtccaacatatgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTcc                                                                                                            <  2:497754‑M2/43‑1 (MQ=255)                                                               ctaggcgctatgctgtccaacatatgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTcc                                                                                                            >  1:497754‑M2/80‑122 (MQ=255)                                                                gTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGa                                                                               >  1:290438/1‑150 (MQ=255)                                                                gTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCCAGTGTTCTGTCTCAAAAATAAGTATTACATTAGAGCTACGCTTCGTTTGTCAAACAGGACGCGGGGTGGAGCGa                                                                               >  1:78865/1‑150 (MQ=255)                                                                   gcgctatgctgtccaacatatgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTcc                                                                                                                             >  2:104249‑M2/76‑101 (MQ=255)                                                                   gcgctatgctgtccaacatatgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTcc                                                                                                                             <  1:104249‑M2/26‑1 (MQ=255)                                                                    aTACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCaaa                                                                                                   <  1:127048/126‑1 (MQ=255)                                                                    aTACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCaaa                                                                                                   >  2:127048/1‑126 (MQ=255)                                                                       cGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGTCTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCAttt                                                                                                                         <  2:191719/101‑1 (MQ=255)                                                                       cGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCAttt                                                                                                                         >  1:191719/1‑101 (MQ=255)                                                                          aTGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTTGTCAAACAGGACGCAGGGTGGAGCCATGAATTCTCa                                                                     >  2:92337/1‑150 (MQ=255)                                                                           tGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCaaa                                                                                                   <  2:170460/119‑1 (MQ=255)                                                                           tGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCaaa                                                                                                   >  1:170460/1‑119 (MQ=255)                                                                              gaCGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCCCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGAc                                                                 >  2:403979/1‑150 (MQ=255)                                                                                 aacatatgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATc                                                              <  2:250014‑M2/89‑1 (MQ=255)                                                                                     tCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGTTGAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATGGTGc                                                          >  1:72529/1‑150 (MQ=255)                                                                                      atgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATtctc                                                                      >  2:483544‑M2/57‑137 (MQ=255)                                                                                      atgcgatgtagcgcgagcggcctttggccagttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATtctc                                                                      <  1:483544‑M2/81‑1 (MQ=255)                                                                                                   ggTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGaa                                            >  1:1077137/1‑150 (MQ=255)                                                                                                    gTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAAc                                           >  1:195096/1‑150 (MQ=255)                                                                                                        gTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGt                                       >  1:381670/1‑150 (MQ=255)                                                                                                                 tcACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                                              >  2:1184506/1‑102 (MQ=255)                                                                                                                 tcACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                                              <  1:1184506/102‑1 (MQ=255)                                                                                                                   acaTTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACa                                                                                                 >  1:653685/1‑81 (MQ=255)                                                                                                                   acaTTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACa                                                                                                 <  2:653685/81‑1 (MQ=255)                                                                                                                    gttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACaa                                         >  2:1197819‑M2/27‑136 (MQ=255)                                                                                                                    gttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACaa                                         <  1:1197819‑M2/110‑1 (MQ=255)                                                                                                                     ttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAACAAGTATTCCa                                                                                                                            <  1:132204‑M2/27‑1 (MQ=255)                                                                                                                     ttggatttcgatgctgacttgctagTGTTCTGTCTCAAAAACAAGTATTCCa                                                                                                                            >  2:132204‑M2/26‑52 (MQ=255)                                                                                                                     aTTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACcga                          >  1:1131508/1‑150 (MQ=255)                                                                                                                      ttGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACcgac                         >  1:831427/1‑150 (MQ=255)                                                                                                                        gAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACcgacga                       <  1:377243/150‑1 (MQ=255)                                                                                                                         aGGCCGCACTGACTCTGCTAGTGTTATGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATtctc                                                                      <  2:470718/102‑1 (MQ=255)                                                                                                                         aGGCCGCACTGACTCTGCTAGTGTTATGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATtctc                                                                      >  1:470718/1‑102 (MQ=255)                                                                                                                           gCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGtt                    <  1:986921/150‑1 (MQ=255)                                                                                                                            ccGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTAATAAGTTTGAGCTACGCTTCCTTGGGCAAACAGGACGCGGGGTGGAGCGATGAATTCTCCAGACCTCGTGCTACGTGCCGATGAATATGTTGTGCTGAACCGACGAGTTc                   <  2:865314/150‑1 (MQ=255)                                                                                                                             cGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCg                  <  2:195096/150‑1 (MQ=255)                                                                                                                                aCTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                                              >  2:971475/1‑87 (MQ=255)                                                                                                                                aCTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                                              <  1:971475/87‑1 (MQ=255)                                                                                                                                    aCTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                                              <  1:498095/83‑1 (MQ=255)                                                                                                                                    aCTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                                              >  2:498095/1‑83 (MQ=255)                                                                                                                                        tgctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACCAGTTGAGCGGAACCGACGAGTTCGGTCTGccacca       <  1:337955‑M2/144‑1 (MQ=255)                                                                                                                                         gctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGtt                                      >  1:842232‑M2/6‑118 (MQ=255)                                                                                                                                         gctagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGtt                                      <  2:842232‑M2/113‑1 (MQ=255)                                                                                                                                           tagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACcg                           <  1:1205569‑M2/124‑1 (MQ=255)                                                                                                                                           tagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACcg                           >  2:1205569‑M2/4‑127 (MQ=255)                                                                                                                                           tagTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTa    <  2:831427‑M2/147‑1 (MQ=255)                                                                                                                                             gTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTAGc  >  2:878520‑M2/2‑150 (MQ=255)                                                                                                                                             gTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACCATGAACCAATTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTAGc  <  2:78865‑M2/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     ATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGGTCTGCCACCATTAGC  >  NC_002947/5061160‑5061449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.