New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3525786	42 (0.930)	4 (0.090)	4/234	NT	9.2%	coding (189/609 nt)	lexA‑II	transcriptional repressor
	?	NC_002947	= 3525795	39 (0.920)					coding (198/609 nt)	lexA‑II	transcriptional repressor

AATTCATCCGTGAGCGCATTGCCGAGCATGGTCAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3525635‑3525786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcgTATGCCCCGCGCCTGGTTTG  <  NC_002947/3525795‑3525776                                                                                                                                                                              AATTCATCCGTGAGCGCATTGCCGAGCATGGTCAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGG                        >  1:993532/1‑150                                                                                        TTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGTATGCCCCGCGCCTGGTT    >  1:137137/1‑83                                                                                        TTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGTATGCCCCGCGCCTGGTT    <  2:137137/83‑1                                                                                                         ACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGTATGCCCCGCGCCTGGTTTG  >  1:768197/1‑68                                                                                                         ACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGTATGCCCCGCGCCTGGTTTG  <  2:768197/68‑1                                                                                                                                                                              AATTCATCCGTGAGCGCATTGCCGAGCATGGTCAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3525635‑3525786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcgTATGCCCCGCGCCTGGTTTG  <  NC_002947/3525795‑3525776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.