New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3525786	42 (0.930)	4 (0.090)	4/234	NT	9.2%	coding (189/609 nt)	lexA‑II	transcriptional repressor
	?	NC_002947	= 3525795	39 (0.920)					coding (198/609 nt)	lexA‑II	transcriptional repressor

TGCCGAGCATGGTCAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTC  >  NC_002947/3525654‑3525924                                                                                                                                              |                                                                                                                                  tGCCGAGCATGGTCAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGc                                                                                                                           <  2:1064791/150‑1 (MQ=255)     gAGCATGGTCAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAg                                                                                                                       >  1:524495/1‑150 (MQ=255)      aGCATGGTCAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCACGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGc                                                                                                                      <  2:524495/150‑1 (MQ=255)              cAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTgcgc                                                                                                              >  2:544088/1‑150 (MQ=255)                   gccgAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCgccggcc                                                                                                         <  2:993532/150‑1 (MQ=255)                        gCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGaaa                                                                                                    >  2:961367/1‑150 (MQ=255)                           tGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGGTGTCACGCCAAACCAGGCGCGGGGCATACGGATGGCCGAGACGGGTCGCCGGCCGGAAATcc                                                                                                 >  1:61965/1‑150 (MQ=255)                                gATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGaa                                                                                            >  2:345474/1‑150 (MQ=255)                                               ttCGGTTTTGCCTCGCGCAGCGTGGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAGTCCTCGAAATACCCGTGCTGGGc                                                                             >  1:1047967/1‑150 (MQ=255)                                                  ggTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAg                                                                          <  1:345474/150‑1 (MQ=255)                                                       tGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTggc                                                                     <  2:527769/150‑1 (MQ=255)                                                         ccTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCg                                                                                              >  2:959192/1‑123 (MQ=255)                                                         ccTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCg                                                                                              <  1:959192/123‑1 (MQ=255)                                                            cgcgCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCTAAATACCCGTGCTGGGCCAGGTGGcggcgg                                                                <  1:544088/150‑1 (MQ=255)                                                            cgcgCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGcggcgg                                                                <  1:168679/150‑1 (MQ=255)                                                               gcAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTg                                                             >  2:1140798/1‑150 (MQ=255)                                                                 aGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGcc                                                           >  1:993427/1‑150 (MQ=255)                                                                               gCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGa                                             >  2:1096621/1‑150 (MQ=255)                                                                                  caTCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCt                                          >  1:303808/1‑150 (MQ=255)                                                                                         gCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATc                                   <  2:102170/150‑1 (MQ=255)                                                                                          cccTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTg                                         <  2:315027/143‑1 (MQ=255)                                                                                          cccTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTg                                         >  1:315027/1‑143 (MQ=255)                                                                                            cTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCAc                                >  2:841668/1‑150 (MQ=255)                                                                                            cTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCAc                                <  2:930920/150‑1 (MQ=255)                                                                                              gtgCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGa                              <  1:1140798/150‑1 (MQ=255)                                                                                                gCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGccc                                                >  2:324060/1‑130 (MQ=255)                                                                                                gCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGccc                                                <  1:324060/130‑1 (MQ=255)                                                                                                          ttACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTgctgct                  >  1:101165/1‑150 (MQ=255)                                                                                                              aTCGATGTCACGCCCGTTCGGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGAc              >  1:347224/1‑150 (MQ=255)                                                                                                                 gATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTg                                         <  2:517346/120‑1 (MQ=255)                                                                                                                 gATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTg                                         >  1:517346/1‑120 (MQ=255)                                                                                                                 gATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGAcccc           <  2:101165/150‑1 (MQ=255)                                                                                                                 gATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGAcccc           >  1:774801/1‑150 (MQ=255)                                                                                                                    gTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGc        <  1:1096621/150‑1 (MQ=255)                                                                                                                       aCGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCt                                                                                 >  2:107915/1‑74 (MQ=255)                                                                                                                       aCGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCt                                                                                 <  1:107915/74‑1 (MQ=255)                                                                                                                         gCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGtt   >  1:302612/1‑150 (MQ=255)                                                                                                                         gCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGtt   >  1:1110808/1‑150 (MQ=255)                                                                                                                          ccAAACCAGGCGCGGGGCATGCGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTc  <  2:61965/150‑1 (MQ=255)                                                                                                                          ccAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTggcg                                                                    >  2:1050268/1‑84 (MQ=255)                                                                                                                          ccAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTggcg                                                                    <  1:1050268/84‑1 (MQ=255)                                                                                                                           cAAACCAGGCGCGGGGCATAcgcctggtttggcgtgacatcgatgtaaccggcctggcacagggcggt                                                                                   <  2:768197‑M2/68‑49 (MQ=255)                                                                                                                           cAAACCAGGCGCGGGGCATAcgcctggtttggcgtgacatcgatgtaaccggcctggcacagggcggt                                                                                   >  1:768197‑M2/1‑20 (MQ=255)                                                                                                                             aaCCAGGCGCGGGGCATAcgcctggtttggcgtgacatcgatgtaaccggcctggcacagggcggtgatgtgcttgcgcgcaa                                                                  >  1:137137‑M2/1‑18 (MQ=255)                                                                                                                             aaCCAGGCGCGGGGCATAcgcctggtttggcgtgacatcgatgtaaccggcctggcacagggcggtgatgtgcttgcgcgcaa                                                                  <  2:137137‑M2/83‑66 (MQ=255)                                                                                                                                              |                                                                                                                                  TGCCGAGCATGGTCAGCCGCCGAGCCTGGCCGATATCGCCACGCGCTTCGGTTTTGCCTCGCGCAGCGTTGCGCGCAAGCACATCACCGCCCTGTGCCAGGCCGGTTACATCGATGTCACGCCAAACCAGGCGCGGGGCATACGCCTGGCCGAGCCGCTGCGCCGGCCGGAAATCCTCGAAATACCCGTGCTGGGCCAGGTGGCGGCGGGTGCCCCCATCGGCCCGGACCTGGGCATCCACGAGCAGTTGCTGCTCGACCCCAGCCTGTTC  >  NC_002947/3525654‑3525924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.