New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3808111 =	NA (NA)	6 (0.130)	5/246	NT	NA	coding (1631/1644 nt)	PP_3365	acetolactate synthase
	?	NC_002947	3808128 =	NA (NA)					coding (1614/1644 nt)	PP_3365	acetolactate synthase

CGCATCCTCAACAGCGAGCTGCGTGAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3808142‑3808111 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTGGCGCCGTAGGCTTCGGCATACT  >  NC_002947/3808128‑3808276                                                                                                                                                                                       CGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCC                                       >  1:1171552/1‑144 CGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCC                                       <  2:1171552/144‑1        TCAACAGCGAGCTGCGTGAGCGCGCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTT                                                                                  <  1:1064947/94‑1        TCAACAGCGAGCTGCGTGAGCGCGCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTT                                                                                  >  2:1064947/1‑94        TCAACAGCGAGCTGCGTGAGCGCGCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTG                                                                                         <  1:620322/87‑1        TCAACAGCGAGCTGCGTGAGCGCGCGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTG                                                                                         >  2:620322/1‑87                                CGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTGGCGCCGTAGGCTTCGGCATACT  >  2:855496/1‑150                                                                                                                                                                                       CGCATCCTCAACAGCGAGCTGCGTGAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3808142‑3808111 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cGCTGTTGAGGATGCGGTCGTTCTCGCTGTAATCGACCGGGCAGTCGATCACGTGCACACCTGGGGTCTTGATGCAGTGCTCCAGCAGCGGCAGCAGGCCTTCGGCGCTTTCCACGCGGTGGCCGTTGGCGCCGTAGGCTTCGGCATACT  >  NC_002947/3808128‑3808276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.